Histone-lysine N-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15180 |
| fragaria_vesca | FvH4_6g43760 |
| malus_domestica | MD09G1103200.v1.1 MD17G1091000.v1.1 |
| prunus_persica | Prupe.3G222600_v2.0.a1 |
| pyrus_communis | pycom09g02660 pycom17g08780 |
| rosa_chinensis | RchiOBHm_Chr2g0160501 |
| rosa_laevigata | RLG00000021218 |
| rosa_multiflora | Rmu_sc0000674.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00089780 |
| rosa_rugosa | Rorug02G0483400 Rorug02G0483400 |
| rosa_samantha | Rh2AG548700 Rh2BG562400 Rh2CG533000 Rh2DG571100 |
| rosa_wichuraiana | Rw2G045430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 4634, 6308 |
| Acc36I | ACCTGC | 3 cut(s) | 3402, 5200, 7291 |
| Acc65I | GGTACC | 1 cut(s) | 917 |
| AccB1I | GGYRCC | 1 cut(s) | 917 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 698 |
| AccBSI | CCGCTC | 2 cut(s) | 1177, 1498 |
| AccI | GTMKAC | 3 cut(s) | 2924, 5617, 6864 |
| AccII | CGCG | 1 cut(s) | 4660 |
| AccIII | TCCGGA | 2 cut(s) | 499, 3216 |
| AclI | AACGTT | 1 cut(s) | 4318 |
| AcoI | YGGCCR | 3 cut(s) | 606, 774, 1378 |
| AcvI | CACGTG | 1 cut(s) | 1187 |
| AcyI | GRCGYC | 3 cut(s) | 15, 689, 5838 |
| AdeI | CACNNNGTG | 1 cut(s) | 6816 |
| AflIII | ACRYGT | 4 cut(s) | 1849, 3543, 3882, 4658 |
| AhlI | ACTAGT | 1 cut(s) | 2086 |
| AjiI | CACGTC | 2 cut(s) | 1340, 5621 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2244, 2276, 3999, 4031, 5667, 5699 |
| Alw21I | GWGCWC | 9 cut(s) | 1577, 1966, 3908, 4024, 5107, 5286, 5451, 6636, 7266 |
| Alw44I | GTGCAC | 3 cut(s) | 3904, 4020, 7262 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2129, 4056, 5798, 6203 |
| Ama87I | CYCGRG | 2 cut(s) | 182, 5819 |
| Aor13HI | TCCGGA | 2 cut(s) | 499, 3216 |
| ApaI | GGGCCC | 1 cut(s) | 3899 |
| ApaLI | GTGCAC | 3 cut(s) | 3904, 4020, 7262 |
| AseI | ATTAAT | 2 cut(s) | 1689, 3957 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4011 |
| Asp718I | GGTACC | 1 cut(s) | 917 |
| AspA2I | CCTAGG | 2 cut(s) | 3899, 6883 |
| AspLEI | GCGC | 3 cut(s) | 942, 1233, 5523 |
| AsuC2I | CCSGG | 8 cut(s) | 183, 184, 1193, 1214, 1235, 3464, 4301, 6086 |
| AsuII | TTCGAA | 2 cut(s) | 4154, 4799 |
| AsuNHI | GCTAGC | 1 cut(s) | 3325 |
| AvaI | CYCGRG | 2 cut(s) | 182, 5819 |
| AvaII | GGWCC | 7 cut(s) | 507, 1179, 1195, 1263, 1500, 3146, 4344 |
| AvrII | CCTAGG | 2 cut(s) | 3899, 6883 |
| AxyI | CCTNAGG | 1 cut(s) | 6333 |
| BaeGI | GKGCMC | 4 cut(s) | 3899, 3908, 4024, 7266 |
| BalI | TGGCCA | 2 cut(s) | 608, 1380 |
| BamHI | GGATCC | 1 cut(s) | 1621 |
| BanI | GGYRCC | 1 cut(s) | 917 |
| BanII | GRGCYC | 5 cut(s) | 1577, 1966, 2269, 3899, 5286 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 2206, 2238, 3530, 3562, 4801, 4833 |
| BauI | CACGAG | 2 cut(s) | 3768, 5908 |
| BbrPI | CACGTG | 1 cut(s) | 1187 |
| BbsI | GAAGAC | 5 cut(s) | 1119, 2589, 2670, 3766, 4938 |
| Bbv12I | GWGCWC | 9 cut(s) | 1577, 1966, 3908, 4024, 5107, 5286, 5451, 6636, 7266 |
| BbvCI | CCTCAGC | 4 cut(s) | 279, 5553, 6414, 6426 |
| BceAI | ACGGC | 7 cut(s) | 789, 1023, 1723, 3830, 4299, 7103, 7211 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2529, 2563, 6764, 6798 |
| BciVI | GTATCC | 1 cut(s) | 5188 |
| BclI | TGATCA | 5 cut(s) | 1207, 1417, 1975, 3181, 4704 |
| BcnI | CCSGG | 8 cut(s) | 183, 184, 1193, 1214, 1235, 3464, 4301, 6086 |
| BcuI | ACTAGT | 1 cut(s) | 2086 |
| BfmI | CTRYAG | 5 cut(s) | 2460, 2952, 3167, 5365, 5943 |
| BfuAI | ACCTGC | 3 cut(s) | 3402, 5200, 7291 |
| BfuI | GTATCC | 1 cut(s) | 5188 |
| BglII | AGATCT | 4 cut(s) | 1241, 1367, 1388, 2239 |
| BlnI | CCTAGG | 2 cut(s) | 3899, 6883 |
| BmcAI | AGTACT | 3 cut(s) | 872, 4256, 4978 |
| Bme18I | GGWCC | 7 cut(s) | 507, 1179, 1195, 1263, 1500, 3146, 4344 |
| BmeT110I | CYCGRG | 2 cut(s) | 182, 5819 |
| BmgBI | CACGTC | 2 cut(s) | 1340, 5621 |
| BmrI | ACTGGG | 5 cut(s) | 1620, 1850, 5037, 5496, 6917 |
| BmtI | GCTAGC | 1 cut(s) | 3329 |
| BmuI | ACTGGG | 5 cut(s) | 1620, 1850, 5037, 5496, 6917 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2804 |
| BpiI | GAAGAC | 5 cut(s) | 1119, 2589, 2670, 3766, 4938 |
| BpmI | CTGGAG | 7 cut(s) | 1087, 2082, 2151, 3856, 4635, 4971, 6554 |
| Bpu10I | CCTNAGC | 5 cut(s) | 279, 1023, 5553, 6414, 6426 |
| Bpu14I | TTCGAA | 2 cut(s) | 4154, 4799 |
| BpuEI | CTTGAG | 4 cut(s) | 1647, 2370, 3805, 6413 |
| BpuMI | CCSGG | 8 cut(s) | 183, 184, 1193, 1214, 1235, 3464, 4301, 6086 |
| BsaAI | YACGTR | 2 cut(s) | 1187, 3572 |
| BsaBI | GATNNNNATC | 3 cut(s) | 3282, 5966, 6162 |
| BsaHI | GRCGYC | 3 cut(s) | 15, 689, 5838 |
| BsaI | GGTCTC | 2 cut(s) | 535, 7147 |
| BsaWI | WCCGGW | 3 cut(s) | 499, 1197, 3216 |
| Bse118I | RCCGGY | 1 cut(s) | 121 |
| Bse21I | CCTNAGG | 1 cut(s) | 6333 |
| Bse3DI | GCAATG | 1 cut(s) | 868 |
| Bse8I | GATNNNNATC | 3 cut(s) | 3282, 5966, 6162 |
| BseAI | TCCGGA | 2 cut(s) | 499, 3216 |
| BseJI | GATNNNNATC | 3 cut(s) | 3282, 5966, 6162 |
| BseMI | GCAATG | 1 cut(s) | 868 |
| BseSI | GKGCMC | 4 cut(s) | 3899, 3908, 4024, 7266 |
| BseYI | CCCAGC | 4 cut(s) | 2138, 3131, 3738, 6253 |
| BsgI | GTGCAG | 7 cut(s) | 1634, 2223, 2463, 3380, 4597, 5440, 7014 |
| Bsh1236I | CGCG | 1 cut(s) | 4660 |
| BshNI | GGYRCC | 1 cut(s) | 917 |
| BsiHKAI | GWGCWC | 9 cut(s) | 1577, 1966, 3908, 4024, 5107, 5286, 5451, 6636, 7266 |
| BsiHKCI | CYCGRG | 2 cut(s) | 182, 5819 |
| BslFI | GGGAC | 7 cut(s) | 331, 488, 1165, 1249, 1486, 1838, 4469 |
| BsmBI | CGTCTC | 3 cut(s) | 1746, 4274, 4689 |
| BsmFI | GGGAC | 7 cut(s) | 331, 488, 1165, 1249, 1486, 1838, 4469 |
| BsmI | GAATGC | 1 cut(s) | 6523 |
| Bso31I | GGTCTC | 2 cut(s) | 535, 7147 |
| BsoBI | CYCGRG | 2 cut(s) | 182, 5819 |
| Bsp119I | TTCGAA | 2 cut(s) | 4154, 4799 |
| Bsp120I | GGGCCC | 1 cut(s) | 3895 |
| Bsp13I | TCCGGA | 2 cut(s) | 499, 3216 |
| Bsp1407I | TGTACA | 5 cut(s) | 843, 3562, 4311, 6435, 6755 |
| Bsp19I | CCATGG | 2 cut(s) | 2872, 3500 |
| BspEI | TCCGGA | 2 cut(s) | 499, 3216 |
| BspFNI | CGCG | 1 cut(s) | 4660 |
| BspHI | TCATGA | 4 cut(s) | 2392, 3433, 4687, 6670 |
| BspMAI | CTGCAG | 2 cut(s) | 2464, 2956 |
| BspMI | ACCTGC | 3 cut(s) | 3402, 5200, 7291 |
| BspOI | GCTAGC | 1 cut(s) | 3329 |
| BspQI | GCTCTTC | 2 cut(s) | 1728, 1794 |
| BspT104I | TTCGAA | 2 cut(s) | 4154, 4799 |
| BspT107I | GGYRCC | 1 cut(s) | 917 |
| BspTNI | GGTCTC | 2 cut(s) | 535, 7147 |
| BsrBI | CCGCTC | 2 cut(s) | 1177, 1498 |
| BsrDI | GCAATG | 1 cut(s) | 868 |
| BsrFI | RCCGGY | 1 cut(s) | 121 |
| BsrGI | TGTACA | 5 cut(s) | 843, 3562, 4311, 6435, 6755 |
| BssAI | RCCGGY | 1 cut(s) | 121 |
| BssNAI | GTATAC | 2 cut(s) | 2925, 6865 |
| BssNI | GRCGYC | 3 cut(s) | 15, 689, 5838 |
| BssSI | CACGAG | 2 cut(s) | 3768, 5908 |
| Bst1107I | GTATAC | 2 cut(s) | 2925, 6865 |
| Bst2BI | CACGAG | 2 cut(s) | 3768, 5908 |
| BstACI | GRCGYC | 3 cut(s) | 15, 689, 5838 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3575, 5888 |
| BstAUI | TGTACA | 5 cut(s) | 843, 3562, 4311, 6435, 6755 |
| BstBAI | YACGTR | 2 cut(s) | 1187, 3572 |
| BstBI | TTCGAA | 2 cut(s) | 4154, 4799 |
| BstDSI | CCRYGG | 2 cut(s) | 2872, 3500 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2273 |
| BstFNI | CGCG | 1 cut(s) | 4660 |
| BstHHI | GCGC | 3 cut(s) | 942, 1233, 5523 |
| BstNSI | RCATGY | 8 cut(s) | 24, 28, 1853, 2348, 2859, 3547, 3569, 3886 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2804 |
| BstSFI | CTRYAG | 5 cut(s) | 2460, 2952, 3167, 5365, 5943 |
| BstSLI | GKGCMC | 4 cut(s) | 3899, 3908, 4024, 7266 |
| BstUI | CGCG | 1 cut(s) | 4660 |
| BstV2I | GAAGAC | 5 cut(s) | 1119, 2589, 2670, 3766, 4938 |
| BstX2I | RGATCY | 7 cut(s) | 1241, 1367, 1388, 1621, 1694, 2239, 5788 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 588 |
| BstYI | RGATCY | 7 cut(s) | 1241, 1367, 1388, 1621, 1694, 2239, 5788 |
| BstZ17I | GTATAC | 2 cut(s) | 2925, 6865 |
| Bsu36I | CCTNAGG | 1 cut(s) | 6333 |
| BsuI | GTATCC | 1 cut(s) | 5188 |
| BtgI | CCRYGG | 2 cut(s) | 2872, 3500 |
| BtgZI | GCGATG | 2 cut(s) | 21, 6508 |
| BtrI | CACGTC | 2 cut(s) | 1340, 5621 |
| BtsI | GCAGTG | 2 cut(s) | 2965, 3214 |
| BveI | ACCTGC | 3 cut(s) | 3402, 5200, 7291 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2129, 4056, 5798, 6203 |
| CciI | TCATGA | 4 cut(s) | 2392, 3433, 4687, 6670 |
| CfoI | GCGC | 3 cut(s) | 942, 1233, 5523 |
| Cfr10I | RCCGGY | 1 cut(s) | 121 |
| Cfr9I | CCCGGG | 1 cut(s) | 182 |
| CseI | GACGC | 3 cut(s) | 4, 697, 5846 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5659, 5694 |
| DraI | TTTAAA | 2 cut(s) | 2235, 6345 |
| DraIII | CACNNNGTG | 1 cut(s) | 6816 |
| EaeI | YGGCCR | 3 cut(s) | 606, 774, 1378 |
| EciI | GGCGGA | 2 cut(s) | 1585, 5215 |
| Ecl136II | GAGCTC | 3 cut(s) | 1575, 1964, 5284 |
| Eco147I | AGGCCT | 1 cut(s) | 1522 |
| Eco24I | GRGCYC | 5 cut(s) | 1577, 1966, 2269, 3899, 5286 |
| Eco31I | GGTCTC | 2 cut(s) | 535, 7147 |
| Eco32I | GATATC | 2 cut(s) | 4048, 4564 |
| Eco47I | GGWCC | 7 cut(s) | 507, 1179, 1195, 1263, 1500, 3146, 4344 |
| Eco53kI | GAGCTC | 3 cut(s) | 1575, 1964, 5284 |
| Eco72I | CACGTG | 1 cut(s) | 1187 |
| Eco81I | CCTNAGG | 1 cut(s) | 6333 |
| Eco88I | CYCGRG | 2 cut(s) | 182, 5819 |
| EcoICRI | GAGCTC | 3 cut(s) | 1575, 1964, 5284 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2273 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1263, 3146, 3896, 6887 |
| EcoRI | GAATTC | 4 cut(s) | 356, 527, 5985, 6150 |
| EcoRV | GATATC | 2 cut(s) | 4048, 4564 |
| EcoT22I | ATGCAT | 5 cut(s) | 26, 2857, 3044, 4858, 5877 |
| EcoT38I | GRGCYC | 5 cut(s) | 1577, 1966, 2269, 3899, 5286 |
| Esp3I | CGTCTC | 3 cut(s) | 1746, 4274, 4689 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 3999, 4031, 5526, 5558, 6573, 6605 |
| FaqI | GGGAC | 7 cut(s) | 331, 488, 1165, 1249, 1486, 1838, 4469 |
| FauNDI | CATATG | 7 cut(s) | 1249, 1270, 1291, 1312, 1354, 1396, 6695 |
| FbaI | TGATCA | 5 cut(s) | 1207, 1417, 1975, 3181, 4704 |
| FblI | GTMKAC | 3 cut(s) | 2924, 5617, 6864 |
| FriOI | GRGCYC | 5 cut(s) | 1577, 1966, 2269, 3899, 5286 |
| GlaI | GCGC | 3 cut(s) | 941, 1232, 5522 |
| GsaI | CCCAGC | 4 cut(s) | 2142, 3135, 3742, 6257 |
| GsuI | CTGGAG | 7 cut(s) | 1087, 2082, 2151, 3856, 4635, 4971, 6554 |
| HgaI | GACGC | 3 cut(s) | 4, 697, 5846 |
| HhaI | GCGC | 3 cut(s) | 942, 1233, 5523 |
| Hin1I | GRCGYC | 3 cut(s) | 15, 689, 5838 |
| Hin6I | GCGC | 3 cut(s) | 940, 1231, 5521 |
| HinP1I | GCGC | 3 cut(s) | 940, 1231, 5521 |
| HincII | GTYRAC | 2 cut(s) | 2475, 5618 |
| HindII | GTYRAC | 2 cut(s) | 2475, 5618 |
| HindIII | AAGCTT | 7 cut(s) | 2103, 2580, 3428, 5050, 5122, 6180, 6326 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 5622 |
| Hsp92I | GRCGYC | 3 cut(s) | 15, 689, 5838 |
| HspAI | GCGC | 3 cut(s) | 940, 1231, 5521 |
| Kpn2I | TCCGGA | 2 cut(s) | 499, 3216 |
| KpnI | GGTACC | 1 cut(s) | 921 |
| Ksp22I | TGATCA | 5 cut(s) | 1207, 1417, 1975, 3181, 4704 |
| LguI | GCTCTTC | 2 cut(s) | 1728, 1794 |
| MbiI | CCGCTC | 2 cut(s) | 1177, 1498 |
| MfeI | CAATTG | 1 cut(s) | 3095 |
| MflI | RGATCY | 7 cut(s) | 1241, 1367, 1388, 1621, 1694, 2239, 5788 |
| MlsI | TGGCCA | 2 cut(s) | 608, 1380 |
| MluI | ACGCGT | 1 cut(s) | 4658 |
| MluNI | TGGCCA | 2 cut(s) | 608, 1380 |
| MmeI | TCCRAC | 7 cut(s) | 1526, 2242, 2296, 3513, 5385, 6156, 7227 |
| Mox20I | TGGCCA | 2 cut(s) | 608, 1380 |
| Mph1103I | ATGCAT | 5 cut(s) | 26, 2857, 3044, 4858, 5877 |
| MroI | TCCGGA | 2 cut(s) | 499, 3216 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4011 |
| MscI | TGGCCA | 2 cut(s) | 608, 1380 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2397, 3105, 3207, 3920, 6801 |
| Msp20I | TGGCCA | 2 cut(s) | 608, 1380 |
| MspA1I | CMGCKG | 2 cut(s) | 6557, 6967 |
| MunI | CAATTG | 1 cut(s) | 3095 |
| Mva1269I | GAATGC | 1 cut(s) | 6523 |
| MvnI | CGCG | 1 cut(s) | 4660 |
| NciI | CCSGG | 8 cut(s) | 183, 184, 1193, 1214, 1235, 3464, 4301, 6086 |
| NcoI | CCATGG | 2 cut(s) | 2872, 3500 |
| NdeI | CATATG | 7 cut(s) | 1249, 1270, 1291, 1312, 1354, 1396, 6695 |
| NheI | GCTAGC | 1 cut(s) | 3325 |
| NmeAIII | GCCGAG | 2 cut(s) | 4562, 6748 |
| NsiI | ATGCAT | 5 cut(s) | 26, 2857, 3044, 4858, 5877 |
| NspI | RCATGY | 8 cut(s) | 24, 28, 1853, 2348, 2859, 3547, 3569, 3886 |
| NspV | TTCGAA | 2 cut(s) | 4154, 4799 |
| PaeI | GCATGC | 2 cut(s) | 24, 28 |
| PaeR7I | CTCGAG | 1 cut(s) | 5819 |
| PagI | TCATGA | 4 cut(s) | 2392, 3433, 4687, 6670 |
| PasI | CCCWGGG | 1 cut(s) | 879 |
| PceI | AGGCCT | 1 cut(s) | 1522 |
| PciI | ACATGT | 3 cut(s) | 1849, 3543, 3882 |
| PciSI | GCTCTTC | 2 cut(s) | 1728, 1794 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4378 |
| PctI | GAATGC | 1 cut(s) | 6523 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4011 |
| PflFI | GACNNNGTC | 1 cut(s) | 1193 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 698 |
| PmaCI | CACGTG | 1 cut(s) | 1187 |
| PmlI | CACGTG | 1 cut(s) | 1187 |
| Ppu21I | YACGTR | 2 cut(s) | 1187, 3572 |
| PpuMI | RGGWCCY | 2 cut(s) | 1263, 3146 |
| PscI | ACATGT | 3 cut(s) | 1849, 3543, 3882 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2804 |
| PshBI | ATTAAT | 2 cut(s) | 1689, 3957 |
| PsiI | TTATAA | 2 cut(s) | 4634, 6308 |
| Psp124BI | GAGCTC | 3 cut(s) | 1577, 1966, 5286 |
| Psp1406I | AACGTT | 1 cut(s) | 4318 |
| Psp5II | RGGWCCY | 2 cut(s) | 1263, 3146 |
| PspCI | CACGTG | 1 cut(s) | 1187 |
| PspFI | CCCAGC | 4 cut(s) | 2138, 3131, 3738, 6253 |
| PspOMI | GGGCCC | 1 cut(s) | 3895 |
| PspPPI | RGGWCCY | 2 cut(s) | 1263, 3146 |
| PstI | CTGCAG | 2 cut(s) | 2464, 2956 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2129, 4056, 5798, 6203 |
| PsuI | RGATCY | 7 cut(s) | 1241, 1367, 1388, 1621, 1694, 2239, 5788 |
| PsyI | GACNNNGTC | 1 cut(s) | 1193 |
| PvuII | CAGCTG | 2 cut(s) | 6557, 6967 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2397, 3105, 3207, 3920, 6801 |
| SacI | GAGCTC | 3 cut(s) | 1577, 1966, 5286 |
| SalI | GTCGAC | 1 cut(s) | 5616 |
| SapI | GCTCTTC | 2 cut(s) | 1728, 1794 |
| ScaI | AGTACT | 3 cut(s) | 872, 4256, 4978 |
| SfcI | CTRYAG | 5 cut(s) | 2460, 2952, 3167, 5365, 5943 |
| Sfr274I | CTCGAG | 1 cut(s) | 5819 |
| SfuI | TTCGAA | 2 cut(s) | 4154, 4799 |
| SinI | GGWCC | 7 cut(s) | 507, 1179, 1195, 1263, 1500, 3146, 4344 |
| SlaI | CTCGAG | 1 cut(s) | 5819 |
| SmaI | CCCGGG | 1 cut(s) | 184 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2397, 3105, 3207, 3920, 6801 |
| SmlI | CTYRAG | 5 cut(s) | 1662, 2385, 3784, 5819, 6392 |
| SmoI | CTYRAG | 5 cut(s) | 1662, 2385, 3784, 5819, 6392 |
| SpeI | ACTAGT | 1 cut(s) | 2086 |
| SphI | GCATGC | 2 cut(s) | 24, 28 |
| SseBI | AGGCCT | 1 cut(s) | 1522 |
| SstI | GAGCTC | 3 cut(s) | 1577, 1966, 5286 |
| StuI | AGGCCT | 1 cut(s) | 1522 |
| TaqII | GACCGA | 2 cut(s) | 2931, 3030 |
| TauI | GCSGC | 3 cut(s) | 2191, 3257, 3479 |
| TspGWI | ACGGA | 3 cut(s) | 852, 1880, 5367 |
| TspMI | CCCGGG | 1 cut(s) | 182 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1193 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 698 |
| VneI | GTGCAC | 3 cut(s) | 3904, 4020, 7262 |
| VpaK11BI | GGWCC | 7 cut(s) | 507, 1179, 1195, 1263, 1500, 3146, 4344 |
| VspI | ATTAAT | 2 cut(s) | 1689, 3957 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2273 |
| XceI | RCATGY | 8 cut(s) | 24, 28, 1853, 2348, 2859, 3547, 3569, 3886 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 340, 3529 |
| XhoI | CTCGAG | 1 cut(s) | 5819 |
| XmaI | CCCGGG | 1 cut(s) | 182 |
| XmaJI | CCTAGG | 2 cut(s) | 3899, 6883 |
| XmiI | GTMKAC | 3 cut(s) | 2924, 5617, 6864 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4011 |
| ZrmI | AGTACT | 3 cut(s) | 872, 4256, 4978 |
| Zsp2I | ATGCAT | 5 cut(s) | 26, 2857, 3044, 4858, 5877 |