MD09G1132200.v1.1

subtilisin-like protease

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
10161146 .. 10165904
4759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1132200.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGAGCCAGGCAATGAGTCCACCAACCGCAGCCCTTTACCTCCTCTCCTTCCTTCTCTCCTCTCTAGTACTCCATACCCCCACCTTTGCCATAAAAAAGTCATATGTGGTATACCTGGGATCACACTCACATCCCCCAAACTTGTCAGAACTTGAACTAAACCAAGTCACAGACAATCACCATGAGTTTCTTGGTTCCTTCTTGGGCAGCCATGAAGTTGCAAAAGAATCCATGTTTTACTCATACACAAGGCACATCAATGGCTTTGCTGCTACACTAGAAGAAGAAGAGGCAGCTCAGATTGCTAAGCATCCAAAGGTAGTCTCAGTATTCTTGAACCAGGGAAGAAAATTACACACAACTCGATCGTGGGATTTCTTGGGACTTGAGCAAGATGGTGTTGTTTCACCCAATTCAATCTGGAAGAAGGCAAGATACGGTGAAGATTCAATCATAGGAAACCTTGATACTGGCGCATGGCCAGAATCCAAGAGCTTTAGTGATGAAGGGTATGGACCGATTCCATCCAAGTGGAAAGGAATCTGCCAAAATGAGATAGATTCTGAATTTCACTGCAACAGGAAGCTTATTGGAGCACGATACTTCAACAAGGGCTATGCTGCAGCTGCTGGTCCCCTCAACTCCTCTTTCAATTCGCCGCGTGACGACGATGGCCATGGCTCCCACACCTTGTCAACCGCTGGGGGCAATTTTGTAACCGGTGCGAGCGTGTTCGGCTTTGGAAATGGAACAGCAAAGGGTGGATCACCAAAAGCCAGGGTTGCAGCCTATAAGGTGTGCTGGCCTCCAGTGGATGGAACTAAGTGTTTTCATGCAGATATATTGGCTGCATTTGATGCGGCCATCGATGACGGTGTTGATGTGTTGTCCGTTTCACTGGGTGGAGATCCTACTACATTCTTCAGTGACAGTGTTTCAATTGGTGCTTTTCATGCTGTTAAGCATGGCATTGTTGTGGTTTGCTCAGCGGGGAATTCTGGTCCGGCTGAAGGTACTGTCTCGAATATATCACCGTGGCAGATCACAGTCGGCGCCAGTACTATGGATAGGGAGTTTCCGAGTTATGTCACCCTCGGCAACTGGAAGCACCTCAAGGTTGGTTATAGTCCATTTCCCGACTAA

Protein Analysis

381

Amino Acids

40.83

Weight (kDa)

6.04

Isoelectric Point (pI)

28.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 34 - 119 1.6e-18 Peptidase inhibitor I9
MORF_dom PF21864 49 - 111 9.4e-07 Multiple organellar RNA editing factor 1, MORF domain
Peptidase_S8 PF00082 150 - 355 8e-16 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1052
AccB7I CCANNNNNTGG 1 cut(s) 815
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 661
AciI CCGC 5 cut(s) 27, 659, 699, 860, 989
AclWI GGATC 3 cut(s) 127, 772, 902
AcoI YGGCCR 3 cut(s) 479, 673, 861
AcsI RAATTY 2 cut(s) 566, 994
AcuI CTGAAG 2 cut(s) 907, 1029
AcyI GRCGYC 1 cut(s) 1053
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 3 cut(s) 69, 1015, 1060
AfiI CCNNNNNNNGG 2 cut(s) 815, 1010
AgeI ACCGGT 1 cut(s) 719
AgsI TTSAA 7 cut(s) 155, 337, 417, 450, 607, 652, 939
AjnI CCWGG 4 cut(s) 6, 114, 339, 776
AluBI AGCT 4 cut(s) 296, 495, 586, 626
AluI AGCT 4 cut(s) 296, 495, 586, 626
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 2 cut(s) 328, 1024
AlwI GGATC 3 cut(s) 127, 772, 902
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 4 cut(s) 479, 673, 803, 861
ApeKI GCWGC 9 cut(s) 29, 207, 269, 293, 620, 623, 626, 785, 848
ApoI RAATTY 2 cut(s) 566, 994
AsiGI ACCGGT 1 cut(s) 719
AspLEI GCGC 2 cut(s) 476, 1055
AspS9I GGNCC 3 cut(s) 515, 632, 1001
AsuHPI GGTGA 6 cut(s) 170, 399, 452, 759, 1023, 1081
AvaII GGWCC 3 cut(s) 515, 632, 1001
BalI TGGCCA 2 cut(s) 481, 675
BanI GGYRCC 1 cut(s) 1052
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 9 cut(s) 41, 219, 256, 305, 607, 613, 635, 797, 835
BccI CCATC 5 cut(s) 389, 532, 665, 809, 872
BciT130I CCWGG 4 cut(s) 8, 116, 341, 778
BcoDI GTCTC 2 cut(s) 328, 1024
BfaI CTAG 2 cut(s) 65, 278
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 1056
BlpI GCTNAGC 2 cut(s) 306, 985
BmcAI AGTACT 2 cut(s) 69, 1060
Bme1390I CCNGG 4 cut(s) 8, 116, 341, 778
Bme18I GGWCC 3 cut(s) 515, 632, 1001
BmgT120I GGNCC 3 cut(s) 515, 632, 1001
BmiI GGNNCC 4 cut(s) 196, 634, 682, 1054
BmrFI CCNGG 4 cut(s) 8, 116, 341, 778
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 2 cut(s) 319, 847
BmuI ACTGGG 1 cut(s) 908
BpmI CTGGAG 1 cut(s) 792
Bpu1102I GCTNAGC 2 cut(s) 306, 985
BpuEI CTTGAG 2 cut(s) 407, 1097
Bsa29I ATCGAT 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 1053
BsaJI CCNNGG 6 cut(s) 115, 340, 676, 777, 1034, 1093
BsaWI WCCGGW 1 cut(s) 719
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 815, 1010
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 5 cut(s) 475, 809, 903, 1056, 1106
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 4 cut(s) 8, 116, 341, 778
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 6 cut(s) 115, 340, 676, 777, 1034, 1093
BseGI GGATG 4 cut(s) 130, 310, 524, 820
BseLI CCNNNNNNNGG 2 cut(s) 815, 1010
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 311, 339, 999
BseNI ACTGG 5 cut(s) 475, 809, 903, 1056, 1106
BseRI GAGGAG 3 cut(s) 32, 49, 634
BseXI GCAGC 9 cut(s) 41, 219, 256, 305, 607, 613, 635, 797, 835
BseYI CCCAGC 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 661
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 481, 675, 805, 863
BshNI GGYRCC 1 cut(s) 1052
BshTI ACCGGT 1 cut(s) 719
BshVI ATCGAT 1 cut(s) 867
BsiEI CGRYCG 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 2 cut(s) 720, 1004
BslFI GGGAC 2 cut(s) 396, 618
BslI CCNNNNNNNGG 2 cut(s) 815, 1010
BsmAI GTCTC 2 cut(s) 328, 1024
BsmFI GGGAC 2 cut(s) 396, 618
BsnI GGCC 4 cut(s) 481, 675, 805, 863
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 5 cut(s) 119, 365, 764, 907, 1041
Bsp1720I GCTNAGC 2 cut(s) 306, 985
Bsp19I CCATGG 1 cut(s) 676
BspACI CCGC 5 cut(s) 27, 659, 699, 860, 989
BspANI GGCC 4 cut(s) 481, 675, 805, 863
BspCNI CTCAG 3 cut(s) 310, 338, 998
BspDI ATCGAT 1 cut(s) 867
BspFNI CGCG 1 cut(s) 661
BspLI GGNNCC 4 cut(s) 196, 634, 682, 1054
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 3 cut(s) 127, 772, 902
BspT107I GGYRCC 1 cut(s) 1052
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 5 cut(s) 475, 809, 903, 1056, 1106
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 6 cut(s) 115, 340, 676, 777, 1034, 1093
BssMI GATC 5 cut(s) 119, 365, 764, 907, 1041
BssNAI GTATAC 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 1053
BssT1I CCWWGG 1 cut(s) 676
Bst1107I GTATAC 1 cut(s) 112
Bst2UI CCWGG 4 cut(s) 8, 116, 341, 778
Bst4CI ACNGT 6 cut(s) 440, 875, 932, 1018, 1035, 1048
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 1053
BstAPI GCANNNNNTGC 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 727, 803
BstDEI CTNAG 5 cut(s) 297, 306, 325, 822, 985
BstDSI CCRYGG 2 cut(s) 676, 1034
BstF5I GGATG 4 cut(s) 130, 310, 524, 820
BstFNI CGCG 1 cut(s) 661
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 476, 1055
BstKTI GATC 5 cut(s) 122, 368, 767, 910, 1044
BstMAI GTCTC 2 cut(s) 328, 1024
BstMBI GATC 5 cut(s) 119, 365, 764, 907, 1041
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 6 cut(s) 302, 626, 735, 782, 857, 953
BstNI CCWGG 4 cut(s) 8, 116, 341, 778
BstSCI CCNGG 4 cut(s) 6, 114, 339, 776
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 9 cut(s) 41, 219, 256, 305, 607, 613, 635, 797, 835
BstX2I RGATCY 1 cut(s) 907
BstXI CCANNNNNNTGG 2 cut(s) 531, 1063
BstYI RGATCY 1 cut(s) 907
BstZ17I GTATAC 1 cut(s) 112
Bsu15I ATCGAT 1 cut(s) 867
BsuRI GGCC 4 cut(s) 481, 675, 805, 863
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 2 cut(s) 676, 1034
BtsCI GGATG 4 cut(s) 130, 310, 524, 820
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 5 cut(s) 571, 816, 896, 931, 937
Cac8I GCNNGC 2 cut(s) 727, 803
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 2 cut(s) 476, 1055
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 3 cut(s) 515, 632, 1001
ClaI ATCGAT 1 cut(s) 867
Csp6I GTAC 3 cut(s) 68, 1014, 1059
CspAI ACCGGT 1 cut(s) 719
CviAII CATG 8 cut(s) 182, 212, 232, 477, 677, 833, 953, 965
CviQI GTAC 3 cut(s) 68, 1014, 1059
DdeI CTNAG 5 cut(s) 297, 306, 325, 822, 985
DinI GGCGCC 1 cut(s) 1054
DpnI GATC 5 cut(s) 121, 367, 766, 909, 1043
DpnII GATC 5 cut(s) 119, 365, 764, 907, 1041
DraIII CACNNNGTG 1 cut(s) 902
EaeI YGGCCR 3 cut(s) 479, 673, 861
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 676
Eco47I GGWCC 3 cut(s) 515, 632, 1001
Eco57I CTGAAG 2 cut(s) 907, 1029
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 4 cut(s) 6, 114, 339, 776
EcoT14I CCWWGG 1 cut(s) 676
EgeI GGCGCC 1 cut(s) 1054
EheI GGCGCC 1 cut(s) 1054
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 8 cut(s) 185, 215, 235, 480, 680, 836, 956, 968
FaqI GGGAC 2 cut(s) 396, 618
FatI CATG 8 cut(s) 181, 211, 231, 476, 676, 832, 952, 964
FauI CCCGC 1 cut(s) 982
FauNDI CATATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 111
FokI GGATG 4 cut(s) 117, 297, 511, 827
FspBI CTAG 2 cut(s) 65, 278
GlaI GCGC 2 cut(s) 475, 1054
GsaI CCCAGC 1 cut(s) 705
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 4 cut(s) 481, 675, 805, 863
HapII CCGG 2 cut(s) 720, 1004
HhaI GCGC 2 cut(s) 476, 1055
Hin1I GRCGYC 1 cut(s) 1053
Hin1II CATG 8 cut(s) 185, 215, 235, 480, 680, 836, 956, 968
Hin6I GCGC 2 cut(s) 474, 1053
HinP1I GCGC 2 cut(s) 474, 1053
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 7 cut(s) 16, 227, 446, 485, 520, 540, 560
HpaII CCGG 2 cut(s) 720, 1004
HphI GGTGA 6 cut(s) 170, 399, 452, 759, 1023, 1081
Hpy166II GTNNAC 3 cut(s) 20, 112, 696
Hpy188I TCNGA 4 cut(s) 148, 300, 565, 1080
Hpy188III TCNNGA 4 cut(s) 334, 421, 1021, 1136
Hpy8I GTNNAC 3 cut(s) 20, 112, 696
Hpy99I CGWCG 1 cut(s) 671
HpyAV CCTTC 6 cut(s) 58, 62, 208, 421, 500, 1004
HpyCH4III ACNGT 6 cut(s) 440, 875, 932, 1018, 1035, 1048
HpyCH4V TGCA 6 cut(s) 221, 576, 623, 785, 836, 851
HpyF10VI GCNNNNNNNGC 6 cut(s) 302, 626, 735, 782, 857, 953
HpyF3I CTNAG 5 cut(s) 297, 306, 325, 822, 985
Hsp92I GRCGYC 1 cut(s) 1053
Hsp92II CATG 8 cut(s) 185, 215, 235, 480, 680, 836, 956, 968
HspAI GCGC 2 cut(s) 474, 1053
KasI GGCGCC 1 cut(s) 1052
Kzo9I GATC 5 cut(s) 119, 365, 764, 907, 1041
LmnI GCTCC 2 cut(s) 593, 686
Lsp1109I GCAGC 9 cut(s) 41, 219, 256, 305, 607, 613, 635, 797, 835
LweI GCATC 2 cut(s) 319, 847
MaeI CTAG 2 cut(s) 65, 278
MaeIII GTNAC 5 cut(s) 166, 662, 715, 926, 1087
MalI GATC 5 cut(s) 121, 367, 766, 909, 1043
MboI GATC 5 cut(s) 119, 365, 764, 907, 1041
MboII GAAGA 7 cut(s) 293, 296, 299, 357, 436, 455, 913
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 1 cut(s) 907
MhlI GDGCHC 1 cut(s) 598
MlsI TGGCCA 2 cut(s) 481, 675
MluCI AATT 7 cut(s) 350, 412, 566, 652, 709, 939, 994
MluNI TGGCCA 2 cut(s) 481, 675
Mly113I GGCGCC 1 cut(s) 1053
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 9 cut(s) 50, 53, 70, 283, 647, 655, 816, 1103, 1121
Mox20I TGGCCA 2 cut(s) 481, 675
MscI TGGCCA 2 cut(s) 481, 675
MseI TTAA 1 cut(s) 960
MslI CAYNNNNRTG 3 cut(s) 258, 529, 974
Msp20I TGGCCA 2 cut(s) 481, 675
MspA1I CMGCKG 3 cut(s) 626, 701, 989
MspI CCGG 2 cut(s) 720, 1004
MspR9I CCNGG 4 cut(s) 8, 116, 341, 778
MunI CAATTG 1 cut(s) 939
MvaI CCWGG 4 cut(s) 8, 116, 341, 778
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 6 cut(s) 302, 626, 735, 782, 857, 953
NarI GGCGCC 1 cut(s) 1053
NcoI CCATGG 1 cut(s) 676
NdeI CATATG 1 cut(s) 103
NdeII GATC 5 cut(s) 119, 365, 764, 907, 1041
NlaIII CATG 8 cut(s) 185, 215, 235, 480, 680, 836, 956, 968
NlaIV GGNNCC 4 cut(s) 196, 634, 682, 1054
NmeAIII GCCGAG 1 cut(s) 1074
NmuCI GTSAC 4 cut(s) 166, 662, 926, 1087
PfeI GAWTC 6 cut(s) 227, 446, 485, 520, 540, 560
PflMI CCANNNNNTGG 1 cut(s) 815
PinAI ACCGGT 1 cut(s) 719
Ple19I CGATCG 1 cut(s) 368
PleI GAGTC 1 cut(s) 24
PluTI GGCGCC 1 cut(s) 1056
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 4 cut(s) 6, 114, 339, 776
PspFI CCCAGC 1 cut(s) 701
PspGI CCWGG 4 cut(s) 6, 114, 339, 776
PspN4I GGNNCC 4 cut(s) 196, 634, 682, 1054
PspPI GGNCC 3 cut(s) 515, 632, 1001
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 907
PvuI CGATCG 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 3 cut(s) 69, 1015, 1060
RsaNI GTAC 3 cut(s) 68, 1014, 1059
RseI CAYNNNNRTG 3 cut(s) 258, 529, 974
SaqAI TTAA 1 cut(s) 960
Sau3AI GATC 5 cut(s) 119, 365, 764, 907, 1041
Sau96I GGNCC 3 cut(s) 515, 632, 1001
ScaI AGTACT 2 cut(s) 69, 1060
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 4 cut(s) 8, 116, 341, 778
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 319, 847
SfcI CTRYAG 1 cut(s) 621
SfoI GGCGCC 1 cut(s) 1054
SinI GGWCC 3 cut(s) 515, 632, 1001
SmiMI CAYNNNNRTG 3 cut(s) 258, 529, 974
SmlI CTYRAG 2 cut(s) 386, 1112
SmoI CTYRAG 2 cut(s) 386, 1112
Sse9I AATT 7 cut(s) 350, 412, 566, 652, 709, 939, 994
SsiI CCGC 5 cut(s) 27, 659, 699, 860, 989
SspDI GGCGCC 1 cut(s) 1052
SspMI CTAG 2 cut(s) 65, 278
StyD4I CCNGG 4 cut(s) 6, 114, 339, 776
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 6 cut(s) 440, 875, 932, 1018, 1035, 1048
TaqI TCGA 3 cut(s) 364, 867, 1022
TaqII GACCGA 1 cut(s) 532
TasI AATT 7 cut(s) 350, 412, 566, 652, 709, 939, 994
TatI WGTACW 2 cut(s) 67, 1058
TauI GCSGC 2 cut(s) 661, 863
TfiI GAWTC 6 cut(s) 227, 446, 485, 520, 540, 560
Tru1I TTAA 1 cut(s) 960
Tru9I TTAA 1 cut(s) 960
TscAI CASTG 5 cut(s) 578, 816, 903, 931, 937
TseFI GTSAC 4 cut(s) 166, 662, 926, 1087
TseI GCWGC 9 cut(s) 29, 207, 269, 293, 620, 623, 626, 785, 848
Tsp45I GTSAC 4 cut(s) 166, 662, 926, 1087
TspDTI ATGAA 4 cut(s) 228, 519, 821, 941
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 5 cut(s) 578, 816, 903, 931, 937
Van91I CCANNNNNTGG 1 cut(s) 815
VpaK11BI GGWCC 3 cut(s) 515, 632, 1001
XapI RAATTY 2 cut(s) 566, 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 2 cut(s) 65, 278
ZrmI AGTACT 2 cut(s) 69, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.