Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007593

Physical Location & Seq

Genomic Coordinates Forward (+)

74140721 .. 74142608

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG513700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGATAGGGAGTTCCCTACTTATATCACTCTTGGCAACTGGAAACACTTCAAGGGACAAAGCTTATCAGCTGTGGCCTTGCCAAGCAAGAGGTTCTATCCACTTACAAGTGCTGCAGATGCTAAAGCAGCTAATACATCTGTTCAAGAAGCTCTGCTGTGCAAGGCTGGAACGCTTGATCCAGAAAAGGTTAAGGGAAAGATATTGGCCTGCCTTCGAGGGGACAATGCAAGAGTGGACAAGGGTGAACAAGCCTTACTTGCTGGTGCTGTGGGGATGATTCTTGCTAACAGTGAAGTTAACGGGAATGAAATTATCTCCGATCCACATGTCCTCCCTGCTTCACATATCAATTTCACCGATGGCTCCCTTGTCTTTGCTTACATCAATTCAACCAAGTCTCCTAGAGCTTACATAAAACGTCCAACTACGCAATTGGGTACAAAACCAGCTCCATTCATGGCGGCATTTTCATCAAAGGGACCTAGCACCATTACACCAGATATCCTTAAGCCTGATATCACTGCACCAGGAGTGAGTGTTATAGCAGCCTACACTGAAGCAGAAGGGCCAACAAATCTACAGTTTGACAGAAGGCGAATTCCATTCAACTCGGTGTCAGGCACATCTATGTCTTGTCCACACATTGCAGGCGTTGTTGGCCTTCTAAAAACCCTCTATCCTCACTGGAGTCCTGCAGCTATTAAATCTGCAATTATGACCACAGCAAAAACACACGATAATAGCAGGGAACCAGTGCTCAATGCTTCAAACTCTGAGGCAACACCATTTAGTTATGGAGCAGGACATGTTAATCCAAATAGTGCTATGGATCCTGGGTTGGTGTACGATTTAGACACTGATGATTACTTGAATTTGCTATGCACATTGGGATACAATGAAACACAAATCGAAACATTCTCACATGAGCCCTACAAATGCCCCAACCCTGCTATTAGTCTCGCAAACCTCAACTACCCCTCAATCACTGTCCCTAAACTCTCTGGCTCCCTTGTTGTGACGAGAACACTGAAAAATGTTGGAGAACCGGGAACTTATAAGGCACTCATCATAAACCCAGATGGTATATTGGTTTCTGTTGAGCCAAAGAGCTTGGAGTTCAAAAAGGTTGGTGAAGAAAAGAGCTTCAGTGTGGTCCTGGAGGCTAAAGATGGCAAAGCAGCAAAAAACTACGTATTTGGAAAGTTGATATGGTCAGATGGTAAGCACAATGTAAGGAGTCCCATTGTGATAAAGGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0016787 GO:0017171 GO:0019538 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0043170 GO:0044238 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

421

Amino Acids

45.15

Weight (kDa)

8.73

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	50 - 123	1e-11	PA domain
Peptidase_S8	PF00082	131 - 269	1.6e-19	Subtilase family
fn3_6	PF17766	323 - 418	5.7e-31	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04160
fragaria_vesca	FvH4_6g40300
malus_domestica	MD09G1132200.v1.1 MD09G1132600.v1.1 MD17G1120300.v1.1
prunus_persica	Prupe.3G147300_v2.0.a1 Prupe.3G193800_v2.0.a1
pyrus_communis	pycom09g05410 pycom17g11090
rosa_chinensis	RchiOBHm_Chr2g0155491
rosa_laevigata	RLG00000020840
rosa_multiflora	Rmu_sc0003439.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093670
rosa_rugosa	Rorug02G0447200 Rorug02G0447200
rosa_samantha	Rh2AG513600 Rh2AG513700 Rh2BG524400 Rh2BG524500 Rh2BG524600 Rh2CG498500 Rh2CG498600 Rh2DG533600
rosa_wichuraiana	Rw2G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1059
AciI	CCGC	2 cut(s)	464, 1259
AclWI	GGATC	4 cut(s)	173, 317, 827, 840
AcsI	RAATTY	2 cut(s)	600, 874
AcuI	CTGAAG	2 cut(s)	579, 1132
AfaI	GTAC	2 cut(s)	442, 848
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflII	CTTAAG	1 cut(s)	509
AflIII	ACRYGT	2 cut(s)	328, 808
AgsI	TTSAA	7 cut(s)	52, 146, 393, 610, 771, 874, 1123
AjnI	CCWGG	3 cut(s)	529, 835, 1158
AloI	GAACNNNNNNTCC	3 cut(s)	28, 163, 195
AluBI	AGCT	9 cut(s)	63, 71, 131, 152, 410, 452, 701, 1113, 1146
AluI	AGCT	9 cut(s)	63, 71, 131, 152, 410, 452, 701, 1113, 1146
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	2 cut(s)	405, 965
AlwI	GGATC	4 cut(s)	173, 317, 827, 840
AoxI	GGCC	5 cut(s)	75, 207, 569, 661, 1260
ApeKI	GCWGC	5 cut(s)	113, 128, 548, 698, 1181
ApoI	RAATTY	2 cut(s)	600, 874
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	482, 569, 1156
AsuC2I	CCSGG	1 cut(s)	1050
AsuHPI	GGTGA	3 cut(s)	257, 349, 1145
AvaII	GGWCC	2 cut(s)	482, 1156
BamHI	GGATCC	1 cut(s)	832
BanII	GRGCYC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	5 cut(s)	100, 140, 560, 710, 1193
BccI	CCATC	4 cut(s)	356, 1076, 1166, 1214
BciT130I	CCWGG	3 cut(s)	531, 837, 1160
BciVI	GTATCC	1 cut(s)	887
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	2 cut(s)	405, 965
BfaI	CTAG	3 cut(s)	405, 486, 1264
BfmI	CTRYAG	3 cut(s)	114, 581, 696
BfrI	CTTAAG	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	887
BisI	GCNGC	7 cut(s)	114, 129, 465, 549, 699, 1182, 1260
BlsI	GCNGC	7 cut(s)	115, 130, 466, 550, 700, 1183, 1261
Bme1390I	CCNGG	4 cut(s)	531, 837, 1050, 1160
Bme18I	GGWCC	2 cut(s)	482, 1156
BmgT120I	GGNCC	3 cut(s)	482, 569, 1156
BmiI	GGNNCC	5 cut(s)	367, 483, 753, 834, 1009
BmrFI	CCNGG	4 cut(s)	531, 837, 1050, 1160
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	2 cut(s)	709, 1181
BpuMI	CCSGG	1 cut(s)	1050
BsaAI	YACGTR	1 cut(s)	1195
BsaJI	CCNNGG	1 cut(s)	836
BsaXI	ACNNNNNCTCC	6 cut(s)	318, 348, 385, 415, 525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	3 cut(s)	44, 692, 755
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	531, 837, 1160
BseDI	CCNNGG	1 cut(s)	836
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	3 cut(s)	44, 692, 755
BseXI	GCAGC	5 cut(s)	100, 140, 560, 710, 1193
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	5 cut(s)	77, 209, 571, 663, 1262
BsiHKAI	GWGCWC	1 cut(s)	762
BsiSI	CCGG	1 cut(s)	1049
BslFI	GGGAC	5 cut(s)	69, 236, 495, 977, 1227
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	405, 965
BsmFI	GGGAC	5 cut(s)	69, 236, 495, 977, 1227
BsnI	GGCC	5 cut(s)	77, 209, 571, 663, 1262
Bsp1286I	GDGCHC	2 cut(s)	762, 933
Bsp143I	GATC	3 cut(s)	178, 322, 832
BspACI	CCGC	2 cut(s)	464, 1259
BspANI	GGCC	5 cut(s)	77, 209, 571, 663, 1262
BspCNI	CTCAG	1 cut(s)	769
BspLI	GGNNCC	5 cut(s)	367, 483, 753, 834, 1009
BspMAI	CTGCAG	2 cut(s)	118, 700
BspPI	GGATC	4 cut(s)	173, 317, 827, 840
BspTI	CTTAAG	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	44, 692, 755
BssECI	CCNNGG	1 cut(s)	836
BssMI	GATC	3 cut(s)	178, 322, 832
Bst2UI	CCWGG	3 cut(s)	531, 837, 1160
Bst4CI	ACNGT	3 cut(s)	293, 585, 991
BstAFI	CTTAAG	1 cut(s)	509
BstBAI	YACGTR	1 cut(s)	1195
BstC8I	GCNNGC	2 cut(s)	211, 652
BstDEI	CTNAG	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	181, 325, 835
BstMAI	GTCTC	2 cut(s)	405, 965
BstMBI	GATC	3 cut(s)	178, 322, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 260, 660
BstNI	CCWGG	3 cut(s)	531, 837, 1160
BstNSI	RCATGY	2 cut(s)	332, 812
BstSCI	CCNGG	4 cut(s)	529, 835, 1048, 1158
BstSFI	CTRYAG	3 cut(s)	114, 581, 696
BstSNI	TACGTA	1 cut(s)	1195
BstV1I	GCAGC	5 cut(s)	100, 140, 560, 710, 1193
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuI	GTATCC	1 cut(s)	887
BsuRI	GGCC	5 cut(s)	77, 209, 571, 663, 1262
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	9 cut(s)	298, 522, 555, 685, 762, 858, 987, 1028, 1156
Cac8I	GCNNGC	2 cut(s)	211, 652
Cfr13I	GGNCC	3 cut(s)	482, 569, 1156
Csp6I	GTAC	2 cut(s)	441, 847
CviAII	CATG	4 cut(s)	329, 460, 809, 926
CviQI	GTAC	2 cut(s)	441, 847
DdeI	CTNAG	1 cut(s)	777
DpnI	GATC	3 cut(s)	180, 324, 834
DpnII	GATC	3 cut(s)	178, 322, 832
Eco105I	TACGTA	1 cut(s)	1195
Eco24I	GRGCYC	1 cut(s)	933
Eco32I	GATATC	2 cut(s)	505, 520
Eco47I	GGWCC	2 cut(s)	482, 1156
Eco57I	CTGAAG	2 cut(s)	579, 1132
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	3 cut(s)	529, 835, 1158
EcoRV	GATATC	2 cut(s)	505, 520
EcoT38I	GRGCYC	1 cut(s)	933
FaeI	CATG	4 cut(s)	332, 463, 812, 929
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	5 cut(s)	69, 236, 495, 977, 1227
FatI	CATG	4 cut(s)	328, 459, 808, 925
Fnu4HI	GCNGC	7 cut(s)	114, 129, 465, 549, 699, 1182, 1260
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	1 cut(s)	933
Fsp4HI	GCNGC	7 cut(s)	114, 129, 465, 549, 699, 1182, 1260
FspBI	CTAG	3 cut(s)	405, 486, 1264
GluI	GCNGC	7 cut(s)	114, 129, 465, 549, 699, 1182, 1260
GsuI	CTGGAG	2 cut(s)	709, 1181
HaeIII	GGCC	5 cut(s)	77, 209, 571, 663, 1262
HapII	CCGG	1 cut(s)	1049
Hin1II	CATG	4 cut(s)	332, 463, 812, 929
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	3 cut(s)	280, 691, 1240
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	1049
HphI	GGTGA	3 cut(s)	257, 349, 1145
Hpy166II	GTNNAC	5 cut(s)	238, 248, 301, 641, 847
Hpy188I	TCNGA	3 cut(s)	322, 778, 1219
Hpy188III	TCNNGA	2 cut(s)	146, 182
Hpy8I	GTNNAC	5 cut(s)	238, 248, 301, 641, 847
HpyAV	CCTTC	4 cut(s)	224, 560, 588, 674
HpyCH4III	ACNGT	3 cut(s)	293, 585, 991
HpyCH4IV	ACGT	2 cut(s)	421, 1194
HpyCH4V	TGCA	8 cut(s)	116, 162, 230, 527, 650, 698, 713, 885
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 260, 660
HpyF3I	CTNAG	1 cut(s)	777
HpySE526I	ACGT	2 cut(s)	421, 1194
Hsp92II	CATG	4 cut(s)	332, 463, 812, 929
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	178, 322, 832
LmnI	GCTCC	4 cut(s)	371, 457, 800, 1013
Lsp1109I	GCAGC	5 cut(s)	100, 140, 560, 710, 1193
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	405, 486, 1264
MaeII	ACGT	2 cut(s)	421, 1194
MaeIII	GTNAC	1 cut(s)	1018
MalI	GATC	3 cut(s)	180, 324, 834
MboI	GATC	3 cut(s)	178, 322, 832
MboII	GAAGA	1 cut(s)	1148
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	2 cut(s)	762, 933
MluCI	AATT	7 cut(s)	312, 352, 388, 434, 600, 714, 874
MlyI	GAGTC	2 cut(s)	700, 1249
MmeI	TCCRAC	2 cut(s)	449, 1021
MnlI	CCTC	9 cut(s)	84, 212, 344, 686, 693, 772, 980, 991, 1156
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	5 cut(s)	192, 300, 510, 705, 813
MslI	CAYNNNNRTG	1 cut(s)	629
MspA1I	CMGCKG	1 cut(s)	71
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	1 cut(s)	1049
MspR9I	CCNGG	4 cut(s)	531, 837, 1050, 1160
MunI	CAATTG	1 cut(s)	434
MvaI	CCWGG	3 cut(s)	531, 837, 1160
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 260, 660
NciI	CCSGG	1 cut(s)	1050
NdeII	GATC	3 cut(s)	178, 322, 832
NlaIII	CATG	4 cut(s)	332, 463, 812, 929
NlaIV	GGNNCC	5 cut(s)	367, 483, 753, 834, 1009
NmuCI	GTSAC	1 cut(s)	1018
NspI	RCATGY	2 cut(s)	332, 812
PciI	ACATGT	2 cut(s)	328, 808
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	1158
PkrI	GCNGC	7 cut(s)	115, 130, 466, 550, 700, 1183, 1261
PleI	GAGTC	2 cut(s)	699, 1248
PpsI	GAGTC	2 cut(s)	699, 1248
Ppu21I	YACGTR	1 cut(s)	1195
PpuMI	RGGWCCY	1 cut(s)	482
PscI	ACATGT	2 cut(s)	328, 808
PsiI	TTATAA	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	529, 835, 1158
PspGI	CCWGG	3 cut(s)	529, 835, 1158
PspN4I	GGNNCC	5 cut(s)	367, 483, 753, 834, 1009
PspPI	GGNCC	3 cut(s)	482, 569, 1156
PspPPI	RGGWCCY	1 cut(s)	482
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PstI	CTGCAG	2 cut(s)	118, 700
PsuI	RGATCY	1 cut(s)	832
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	2 cut(s)	442, 848
RsaNI	GTAC	2 cut(s)	441, 847
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	5 cut(s)	192, 300, 510, 705, 813
SatI	GCNGC	7 cut(s)	114, 129, 465, 549, 699, 1182, 1260
Sau3AI	GATC	3 cut(s)	178, 322, 832
Sau96I	GGNCC	3 cut(s)	482, 569, 1156
SchI	GAGTC	2 cut(s)	700, 1249
ScrFI	CCNGG	4 cut(s)	531, 837, 1050, 1160
SduI	GDGCHC	2 cut(s)	762, 933
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	3 cut(s)	114, 581, 696
SinI	GGWCC	2 cut(s)	482, 1156
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
SnaBI	TACGTA	1 cut(s)	1195
Sse9I	AATT	7 cut(s)	312, 352, 388, 434, 600, 714, 874
SsiI	CCGC	2 cut(s)	464, 1259
SspMI	CTAG	3 cut(s)	405, 486, 1264
StyD4I	CCNGG	4 cut(s)	529, 835, 1048, 1158
TaaI	ACNGT	3 cut(s)	293, 585, 991
TaiI	ACGT	2 cut(s)	424, 1197
TaqI	TCGA	2 cut(s)	217, 912
TasI	AATT	7 cut(s)	312, 352, 388, 434, 600, 714, 874
TauI	GCSGC	2 cut(s)	467, 1262
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	5 cut(s)	192, 300, 510, 705, 813
Tru9I	TTAA	5 cut(s)	192, 300, 510, 705, 813
TscAI	CASTG	9 cut(s)	298, 529, 562, 692, 762, 865, 994, 1035, 1156
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	5 cut(s)	113, 128, 548, 698, 1181
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	4 cut(s)	324, 448, 462, 915
TspRI	CASTG	9 cut(s)	298, 529, 562, 692, 762, 865, 994, 1035, 1156
Vha464I	CTTAAG	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	482, 1156
XapI	RAATTY	2 cut(s)	600, 874
XceI	RCATGY	2 cut(s)	332, 812
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	3 cut(s)	405, 486, 1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.