Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007593

Physical Location & Seq

Genomic Coordinates Reverse (-)

4023076 .. 4023470

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTTTTACTCATACACAAGGCACATCAATGGCTTTGCTGCTACACTAGAAGAAGAAGAGGCAGCTCAGATTGCTAATCATCCAAAGGTAGTCTCAGTATTCTTGAACCAGGGAAGAAAATTACACACAACTCGATCGTGGGATTTCTTGGGACTTGAGCAAGATGATGTTGTTTCACCCAATTCAATCTGGAAGAAGGCAAGATACGGTGAAGATTCAATCATAGGAAACCTTGATACTGGTAAGTTTTTCTTGTTCTTTGTGTGTTTTTTTTTTTTTTTTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0016787 GO:0017171 GO:0019538 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0043170 GO:0044238 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

97

Amino Acids

11.25

Weight (kDa)

5.84

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04160
fragaria_vesca	FvH4_6g40300
malus_domestica	MD09G1132200.v1.1 MD09G1132600.v1.1 MD17G1120300.v1.1
prunus_persica	Prupe.3G147300_v2.0.a1 Prupe.3G193800_v2.0.a1
pyrus_communis	pycom09g05410 pycom17g11090
rosa_chinensis	RchiOBHm_Chr2g0155491
rosa_laevigata	RLG00000020840
rosa_multiflora	Rmu_sc0003439.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093670
rosa_rugosa	Rorug02G0447200 Rorug02G0447200
rosa_samantha	Rh2AG513600 Rh2AG513700 Rh2BG524400 Rh2BG524500 Rh2BG524600 Rh2CG498500 Rh2CG498600 Rh2DG533600
rosa_wichuraiana	Rw2G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	106, 186, 219
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	38, 62
AsuHPI	GGTGA	2 cut(s)	168, 221
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BbvI	GCAGC	2 cut(s)	25, 74
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	39, 63
BlsI	GCNGC	2 cut(s)	40, 64
Bme1390I	CCNGG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	80, 108
BseNI	ACTGG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	25, 74
Bsh1285I	CGRYCG	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	79, 107
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	66, 94
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	134
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	25, 74
BtsCI	GGATG	1 cut(s)	79
CviJI	RGCY	2 cut(s)	33, 65
CviKI_1	RGCY	2 cut(s)	33, 65
DdeI	CTNAG	2 cut(s)	66, 94
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	108
FaiI	YATR	2 cut(s)	13, 224
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	39, 63
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	39, 63
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	39, 63
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	2 cut(s)	168, 221
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	103, 190
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	66, 94
Kzo9I	GATC	1 cut(s)	134
LpnPI	CCDG	4 cut(s)	95, 122, 175, 225
Lsp1109I	GCAGC	2 cut(s)	25, 74
MaeI	CTAG	1 cut(s)	47
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	6 cut(s)	62, 65, 68, 126, 205, 224
MluCI	AATT	2 cut(s)	119, 181
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	289
MslI	CAYNNNNRTG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	40, 64
Ple19I	CGATCG	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PvuI	CGATCG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	2 cut(s)	39, 63
Sau3AI	GATC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	3 cut(s)	67, 90, 234
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	119, 181
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	119, 181
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TseI	GCWGC	2 cut(s)	38, 62
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.