Rorug02G0447200

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006446
Physical Location & Seq
Reverse (-)
57345431 .. 57352876
7446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0447200.1

Sequence Viewer

Length: 2478 bp
ATGACTTCAGAGAAAGAGCTACCGAATCGGGTCGACCAAGAACCAGAACCCGGCAGTCCTTGCTTTTTGCAGAAGTTCAAGCTCTACGAGACTCGCTCGAATTTTTATATGATAGGAAGAGACAAAGGCAGAACCCTTTGGAGAGTGTTAAAGATCGATAGATTGGATCCATCTGAGCTAAACATTCTTGAAGATTCCGCATCGTACACAGATATTGAGTGCTATGACCTTCTAAAACGGATACATGAAGGAAACAAGTCAATGGGTGGACTTAAGTTTATCACCATTTGTTATGGAATTGTTGGGTTCGTGAAGTTTCTGGGACCTTATTACATGCTTATTATTACAAAAAGAAGGAAGATTGGAGCAATTTGTGGTCATACTATCTACGCGATTAGCAAGAGCGAAATGATTCCAGTTCCAAATTCTTCTGTGCGGTCAAACTTGGCTTATTCTAGAAATGAGAACAGATACAAGAAGCTCTTATGCACAGTGGACCTGACAAAGGACTTCTTTTTCAGCTACTCATACAATGTAATGTGTAGTCTTCAAAAGAACTTATGCGACAGTAAGACAGGACCATTCCTTTATGAAACAATGTTCGTTTGGAATGAGTATTTGACTCGTGGAATCCGAAATTGTCTGAATAATACTCTCTGGACAGTTGCCTTAGTTTATGGATTCTTCAAACAGGTCAATCTTTCTGTATCAGGTAGAGATTTCAAGTTGACTGTCATTGCCAGACGTTCCCGTCATTTTGCTGGCACCAGATATTTGAAAAGAGGTGTAAATGAGAAAGGTAGAGTTGCTAACGATGTTGAGACAGAGCAGGTTGTGATTGAAGATGCTTCTGAAGGATGCCCAGTGCAAATAAGTTCAGTTGTGCAGAATCGAGGCTCAATTCCCCTTTTCTGGTCCCAGGAAACCTCACGATTAAATATCAAACCCGACATAATATTATCAAGGAGGGATCAAAATTATGAGGCCACAAGACTTCATTTTGAAAATCTCGTCAAGAGATATGGAAATCCAATTATTATTTTGAATTTGATCAAGACATGTGAGAAGAAGCCTCGAGAAACAATTCTCCGTGCAGAGTTTGCAAATGCTATCCGATTTATCAATAGGAGTTTGTCAAAGGAGAGCCGCCTAAGGTTTCTTCATTGGGATTTGCATAAACATGCCAGAAGCAAAACAACCAATGTGTTGGCACATCTAGGAAAAGTGGCTACATATGCATTGAGCTTAACCGGAATCTTCTATTGTCGAGTAACCCCAGATTTAAGGCCTGAGGGTTCATTCCATGGCTCTTGGTTTGAAAAAAGTGATGATGGTGGTGACTGCTTTTCACATAACTGTTCCAGTAAAGATGAGGATCTTGATAGCCTAGAAACAGAAATTAGCAATGGAAGCGGTGGTGACGATAGGAGCAGGAATCACAATGTCAAACCCCCAATGTTTCAGAAAGGGGTCCTGAGGACCAATTGCATAGACTGTTTAGATCGCACAAATGTAGCCCAATATGCTTATGGGCTAGTTGCTCTTGGACAGCAGTTGCATGCTTTAGGATTTATAGAATCCTCAGATATTGATCTAGATAACCCTCTGGCAGAAGATTTGATGAGAGTTTATGAGGCAATGGGCGACACTCTTGCATTGCAGTATGGTGGTTCTGCAGCTCACAACAAGATATTCTCTGAGAGAAGAGGTCAATGGAAGGCAGCAACTCAGTCCCAAGAGTTCTTTAGAACCCTTCAACGATTTTACAGTAATGCCTACGTGGATGCTGAGAAACAAGATGCTATTAATGTATTCCTAGGGCATTTTCAACCGCTGCAGGGTAAACCAGCATTGTGGGAGTTGGACTCAGACCAGCATTATAATGTTGGGAGGCGCAATCCTAATTTTGCCGATGACAATGGCAGTTCATTTATGAAAAGATCACTATCAGATGGCAATATAATCCATGAAAGTGATTCACCTACGGAAAATACGGATGTTGGACACAATCAGCCTTTATCTGAAATTTCACAAGGAAGTAGCAAGGGTATTTCAGAGTCCGCCCCTACAATCTCAACTTGTGAAAGTGCAATATCTTATCGCAGGTTTACTCCCTCAATGCCATGCAAGCAGCTGTTTGATGGAATGCAAGAGGATCAATGCCTTAACAGTGATCACATTTATTATGATGAGCATGATGATGATTGTAACTTCTCAAATTTTCTAGATGCGGACTGGTTGTCTACATCCGGAAATTCTTGTGAAGAAGAAATGTCTGGAAGGTCCATTGCCAGCCTTTCATCTGAGAATCTTGTGAATGCACCAAAATTTGAAACGAGCACATCTGCTAGTGAATCTGAATCCACAAAAAAGGGAAGAGGGCAGAGTGAATCTGATCTCGCATGTGATAATATGCCACCCGAGTATTCCAACAGCTTCATGAACTGGGTAGCTAACGGGGAGTTGCTGTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

825

Amino Acids

93.58

Weight (kDa)

6.08

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syja_N PF02383 98 - 395 4.5e-82 SacI homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1881
AasI GACNNNNNNGTC 1 cut(s) 750
Acc36I ACCTGC 2 cut(s) 820, 2094
AccB1I GGYRCC 1 cut(s) 764
AccI GTMKAC 2 cut(s) 33, 2243
AccII CGCG 1 cut(s) 392
AccIII TCCGGA 1 cut(s) 2249
AciI CCGC 7 cut(s) 198, 436, 1147, 1413, 1832, 2061, 2231
AclWI GGATC 5 cut(s) 161, 174, 978, 1383, 2163
AcsI RAATTY 7 cut(s) 100, 424, 1045, 2025, 2218, 2254, 2327
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 50, 505, 912, 1838
AflII CTTAAG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 1058
AhdI GACNNNNNGTC 1 cut(s) 2239
AjnI CCWGG 1 cut(s) 918
Alw21I GWGCWC 1 cut(s) 2342
Alw26I GTCTC 3 cut(s) 83, 114, 815
AlwI GGATC 5 cut(s) 161, 174, 978, 1383, 2163
Ama87I CYCGRG 2 cut(s) 1074, 2420
Aor13HI TCCGGA 1 cut(s) 2249
AoxI GGCC 2 cut(s) 984, 1286
ApeKI GCWGC 4 cut(s) 1676, 1721, 1834, 2131
ApoI RAATTY 7 cut(s) 100, 424, 1045, 2025, 2218, 2254, 2327
AseI ATTAAT 1 cut(s) 1806
Asp700I GAANNNNTTC 2 cut(s) 411, 1083
AspA2I CCTAGG 1 cut(s) 1816
AspLEI GCGC 1 cut(s) 1896
AspS9I GGNCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 4 cut(s) 274, 1349, 1430, 1971
AvaI CYCGRG 2 cut(s) 1074, 2420
AvaII GGWCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
AvrII CCTAGG 1 cut(s) 1816
AxyI CCTNAGG 3 cut(s) 1151, 1290, 1475
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 764
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 2342
BbvI GCAGC 4 cut(s) 1688, 1733, 1821, 2143
BccI CCATC 4 cut(s) 178, 1325, 1946, 2135
BcgI CGANNNNNNTGC 2 cut(s) 1634, 1668
BciT130I CCWGG 1 cut(s) 920
BciVI GTATCC 1 cut(s) 234
BclI TGATCA 2 cut(s) 1050, 2173
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 3 cut(s) 83, 114, 815
BfaI CTAG 8 cut(s) 456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
BfmI CTRYAG 2 cut(s) 1674, 1835
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 2 cut(s) 820, 2094
BfuI GTATCC 1 cut(s) 234
BisI GCNGC 5 cut(s) 1147, 1677, 1722, 1835, 2132
BlnI CCTAGG 1 cut(s) 1816
BlsI GCNGC 5 cut(s) 1148, 1678, 1723, 1836, 2133
Bme1390I CCNGG 2 cut(s) 51, 920
Bme18I GGWCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
BmeRI GACNNNNNGTC 1 cut(s) 2239
BmeT110I CYCGRG 2 cut(s) 1074, 2420
BmgT120I GGNCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
BmiI GGNNCC 5 cut(s) 168, 324, 766, 917, 1472
BmrFI CCNGG 2 cut(s) 51, 920
BmrI ACTGGG 2 cut(s) 857, 2455
BmsI GCATC 6 cut(s) 209, 835, 848, 1774, 1789, 2218
BmuI ACTGGG 2 cut(s) 857, 2455
BpiI GAAGAC 1 cut(s) 539
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 1850, 1882
BpuMI CCSGG 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 1780
BsaBI GATNNNNATC 3 cut(s) 1374, 1590, 1945
BsaJI CCNNGG 3 cut(s) 918, 1303, 1816
BsaWI WCCGGW 2 cut(s) 1250, 2249
BsaXI ACNNNNNCTCC 1 cut(s) 2453
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 505, 912, 1838
Bse1I ACTGG 5 cut(s) 416, 863, 1362, 2240, 2450
Bse21I CCTNAGG 3 cut(s) 1151, 1290, 1475
Bse3DI GCAATG 5 cut(s) 735, 1411, 1644, 1655, 2286
Bse8I GATNNNNATC 3 cut(s) 1374, 1590, 1945
BseAI TCCGGA 1 cut(s) 2249
BseBI CCWGG 1 cut(s) 920
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 3 cut(s) 918, 1303, 1816
BseGI GGATG 4 cut(s) 863, 1789, 2002, 2246
BseJI GATNNNNATC 3 cut(s) 1374, 1590, 1945
BseLI CCNNNNNNNGG 4 cut(s) 50, 505, 912, 1838
BseMI GCAATG 5 cut(s) 735, 1411, 1644, 1655, 2286
BseMII CTCAG 9 cut(s) 165, 1281, 1466, 1596, 1689, 1742, 1779, 1881, 2295
BseNI ACTGG 5 cut(s) 416, 863, 1362, 2240, 2450
BseXI GCAGC 4 cut(s) 1688, 1733, 1821, 2143
BsgI GTGCAG 2 cut(s) 905, 1113
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 986, 1288
BshNI GGYRCC 1 cut(s) 764
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 2342
BsiHKCI CYCGRG 2 cut(s) 1074, 2420
BsiSI CCGG 3 cut(s) 51, 1251, 2250
BslFI GGGAC 3 cut(s) 336, 901, 1717
BslI CCNNNNNNNGG 4 cut(s) 50, 505, 912, 1838
BsmAI GTCTC 3 cut(s) 83, 114, 815
BsmFI GGGAC 3 cut(s) 336, 901, 1717
BsmI GAATGC 2 cut(s) 2151, 2323
BsnI GGCC 2 cut(s) 986, 1288
BsoBI CYCGRG 2 cut(s) 1074, 2420
Bsp1286I GDGCHC 1 cut(s) 2342
Bsp13I TCCGGA 1 cut(s) 2249
Bsp19I CCATGG 1 cut(s) 1303
BspACI CCGC 7 cut(s) 198, 436, 1147, 1413, 1832, 2061, 2231
BspANI GGCC 2 cut(s) 986, 1288
BspCNI CTCAG 9 cut(s) 166, 1282, 1467, 1595, 1690, 1741, 1780, 1880, 2296
BspDI ATCGAT 1 cut(s) 156
BspEI TCCGGA 1 cut(s) 2249
BspFNI CGCG 1 cut(s) 392
BspHI TCATGA 1 cut(s) 2439
BspLI GGNNCC 5 cut(s) 168, 324, 766, 917, 1472
BspMAI CTGCAG 2 cut(s) 1678, 1839
BspMI ACCTGC 2 cut(s) 820, 2094
BspPI GGATC 5 cut(s) 161, 174, 978, 1383, 2163
BspT107I GGYRCC 1 cut(s) 764
BspTI CTTAAG 1 cut(s) 272
BsrDI GCAATG 5 cut(s) 735, 1411, 1644, 1655, 2286
BsrI ACTGG 5 cut(s) 416, 863, 1362, 2240, 2450
BssECI CCNNGG 3 cut(s) 918, 1303, 1816
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 2 cut(s) 1303, 1816
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 920
Bst4CI ACNGT 8 cut(s) 493, 569, 664, 733, 1358, 1496, 1769, 2171
Bst6I CTCTTC 3 cut(s) 112, 1699, 2371
BstAFI CTTAAG 1 cut(s) 272
BstAPI GCANNNNNTGC 2 cut(s) 60, 1100
BstBAI YACGTR 1 cut(s) 1780
BstC8I GCNNGC 4 cut(s) 763, 1560, 2129, 2293
BstDSI CCRYGG 1 cut(s) 1303
BstENI CCTNNNNNAGG 1 cut(s) 503
BstF5I GGATG 4 cut(s) 863, 1789, 2002, 2246
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 1896
BstMAI GTCTC 3 cut(s) 83, 114, 815
BstMWI GCNNNNNNNGC 6 cut(s) 60, 1100, 1235, 1410, 1523, 2128
BstNI CCWGG 1 cut(s) 920
BstNSI RCATGY 5 cut(s) 337, 1062, 1184, 1562, 2406
BstSCI CCNGG 2 cut(s) 49, 918
BstSFI CTRYAG 2 cut(s) 1674, 1835
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 1688, 1733, 1821, 2143
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 2 cut(s) 166, 1375
BstXI CCANNNNNNTGG 2 cut(s) 1207, 1854
BstYI RGATCY 2 cut(s) 166, 1375
Bsu15I ATCGAT 1 cut(s) 156
Bsu36I CCTNAGG 3 cut(s) 1151, 1290, 1475
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 2 cut(s) 986, 1288
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 1303
BtsCI GGATG 4 cut(s) 863, 1789, 2002, 2246
BtsIMutI CAGTG 3 cut(s) 498, 870, 2176
BveI ACCTGC 2 cut(s) 820, 2094
Cac8I GCNNGC 4 cut(s) 763, 1560, 2129, 2293
CciI TCATGA 1 cut(s) 2439
CfoI GCGC 1 cut(s) 1896
Cfr13I GGNCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
ClaI ATCGAT 1 cut(s) 156
Csp6I GTAC 1 cut(s) 205
CviQI GTAC 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 750
DriI GACNNNNNGTC 1 cut(s) 2239
DseDI GACNNNNNNGTC 1 cut(s) 750
Eam1104I CTCTTC 3 cut(s) 112, 1699, 2371
Eam1105I GACNNNNNGTC 1 cut(s) 2239
EarI CTCTTC 3 cut(s) 112, 1699, 2371
EciI GGCGGA 1 cut(s) 2050
Eco130I CCWWGG 2 cut(s) 1303, 1816
Eco147I AGGCCT 1 cut(s) 1288
Eco47I GGWCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
Eco57I CTGAAG 1 cut(s) 873
Eco81I CCTNAGG 3 cut(s) 1151, 1290, 1475
Eco88I CYCGRG 2 cut(s) 1074, 2420
EcoNI CCTNNNNNAGG 1 cut(s) 503
EcoO109I RGGNCCY 2 cut(s) 323, 1471
EcoRII CCWGG 1 cut(s) 918
EcoT14I CCWWGG 2 cut(s) 1303, 1816
EcoT22I ATGCAT 1 cut(s) 1240
ErhI CCWWGG 2 cut(s) 1303, 1816
FalI AAGNNNNNCTT 4 cut(s) 467, 499, 497, 529
FaqI GGGAC 3 cut(s) 336, 901, 1717
FauNDI CATATG 1 cut(s) 1234
FbaI TGATCA 2 cut(s) 1050, 2173
FblI GTMKAC 2 cut(s) 33, 2243
Fnu4HI GCNGC 5 cut(s) 1147, 1677, 1722, 1835, 2132
FokI GGATG 4 cut(s) 870, 1796, 2009, 2233
Fsp4HI GCNGC 5 cut(s) 1147, 1677, 1722, 1835, 2132
FspBI CTAG 8 cut(s) 456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
GlaI GCGC 1 cut(s) 1895
GluI GCNGC 5 cut(s) 1147, 1677, 1722, 1835, 2132
HaeIII GGCC 2 cut(s) 986, 1288
HapII CCGG 3 cut(s) 51, 1251, 2250
HhaI GCGC 1 cut(s) 1896
Hin6I GCGC 1 cut(s) 1894
HinP1I GCGC 1 cut(s) 1894
HincII GTYRAC 2 cut(s) 34, 729
HindII GTYRAC 2 cut(s) 34, 729
HpaII CCGG 3 cut(s) 51, 1251, 2250
HphI GGTGA 4 cut(s) 274, 1349, 1430, 1971
Hpy166II GTNNAC 8 cut(s) 34, 207, 269, 496, 729, 1844, 2109, 2244
Hpy8I GTNNAC 8 cut(s) 34, 207, 269, 496, 729, 1844, 2109, 2244
HpyAV CCTTC 7 cut(s) 239, 242, 348, 848, 1711, 1763, 2274
HpyCH4III ACNGT 8 cut(s) 493, 569, 664, 733, 1358, 1496, 1769, 2171
HpyCH4IV ACGT 2 cut(s) 745, 1779
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 1100, 1235, 1410, 1523, 2128
HpySE526I ACGT 2 cut(s) 745, 1779
HspAI GCGC 1 cut(s) 1894
Kpn2I TCCGGA 1 cut(s) 2249
Ksp22I TGATCA 2 cut(s) 1050, 2173
LmnI GCTCC 2 cut(s) 365, 1428
Lsp1109I GCAGC 4 cut(s) 1688, 1733, 1821, 2143
LweI GCATC 6 cut(s) 209, 835, 848, 1774, 1789, 2218
MaeI CTAG 8 cut(s) 456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
MaeII ACGT 2 cut(s) 745, 1779
MaeIII GTNAC 4 cut(s) 1270, 1337, 1418, 2207
MfeI CAATTG 1 cut(s) 1483
MflI RGATCY 2 cut(s) 166, 1375
MhlI GDGCHC 1 cut(s) 2342
MlyI GAGTC 4 cut(s) 85, 616, 1859, 2066
MmeI TCCRAC 3 cut(s) 1842, 1981, 2454
Mph1103I ATGCAT 1 cut(s) 1240
MroI TCCGGA 1 cut(s) 2249
MroXI GAANNNNTTC 2 cut(s) 411, 1083
MseI TTAA 7 cut(s) 149, 273, 935, 1247, 1283, 1806, 2166
MslI CAYNNNNRTG 4 cut(s) 1179, 1881, 1971, 2199
MspA1I CMGCKG 2 cut(s) 1834, 2134
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 3 cut(s) 51, 1251, 2250
MspR9I CCNGG 2 cut(s) 51, 920
MunI CAATTG 1 cut(s) 1483
Mva1269I GAATGC 2 cut(s) 2151, 2323
MvaI CCWGG 1 cut(s) 920
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 6 cut(s) 60, 1100, 1235, 1410, 1523, 2128
NciI CCSGG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 1303
NdeI CATATG 1 cut(s) 1234
NlaIV GGNNCC 5 cut(s) 168, 324, 766, 917, 1472
NmuCI GTSAC 2 cut(s) 1337, 1418
NsiI ATGCAT 1 cut(s) 1240
NspI RCATGY 5 cut(s) 337, 1062, 1184, 1562, 2406
PaeI GCATGC 1 cut(s) 1562
PaeR7I CTCGAG 1 cut(s) 1074
PagI TCATGA 1 cut(s) 2439
PceI AGGCCT 1 cut(s) 1288
PciI ACATGT 1 cut(s) 1058
PcsI WCGNNNNNNNCGW 1 cut(s) 631
PctI GAATGC 2 cut(s) 2151, 2323
PdmI GAANNNNTTC 2 cut(s) 411, 1083
PkrI GCNGC 5 cut(s) 1148, 1678, 1723, 1836, 2133
PleI GAGTC 4 cut(s) 85, 616, 1859, 2065
PpsI GAGTC 4 cut(s) 85, 616, 1859, 2065
Ppu21I YACGTR 1 cut(s) 1780
PpuMI RGGWCCY 2 cut(s) 323, 1471
PscI ACATGT 1 cut(s) 1058
PshBI ATTAAT 1 cut(s) 1806
PsiI TTATAA 1 cut(s) 1881
Psp5II RGGWCCY 2 cut(s) 323, 1471
Psp6I CCWGG 1 cut(s) 918
PspGI CCWGG 1 cut(s) 918
PspN4I GGNNCC 5 cut(s) 168, 324, 766, 917, 1472
PspPI GGNCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
PspPPI RGGWCCY 2 cut(s) 323, 1471
PstI CTGCAG 2 cut(s) 1678, 1839
PsuI RGATCY 2 cut(s) 166, 1375
PvuII CAGCTG 1 cut(s) 2134
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 4 cut(s) 1179, 1881, 1971, 2199
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 7 cut(s) 149, 273, 935, 1247, 1283, 1806, 2166
SatI GCNGC 5 cut(s) 1147, 1677, 1722, 1835, 2132
Sau96I GGNCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
SchI GAGTC 4 cut(s) 85, 616, 1859, 2066
ScrFI CCNGG 2 cut(s) 51, 920
SduI GDGCHC 1 cut(s) 2342
SfaNI GCATC 6 cut(s) 209, 835, 848, 1774, 1789, 2218
SfcI CTRYAG 2 cut(s) 1674, 1835
Sfr274I CTCGAG 1 cut(s) 1074
SinI GGWCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
SlaI CTCGAG 1 cut(s) 1074
SmiMI CAYNNNNRTG 4 cut(s) 1179, 1881, 1971, 2199
SmlI CTYRAG 2 cut(s) 272, 1074
SmoI CTYRAG 2 cut(s) 272, 1074
SphI GCATGC 1 cut(s) 1562
SseBI AGGCCT 1 cut(s) 1288
SsiI CCGC 7 cut(s) 198, 436, 1147, 1413, 1832, 2061, 2231
SspI AATATT 1 cut(s) 957
SspMI CTAG 8 cut(s) 456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
StuI AGGCCT 1 cut(s) 1288
StyD4I CCNGG 2 cut(s) 49, 918
StyI CCWWGG 2 cut(s) 1303, 1816
TaaI ACNGT 8 cut(s) 493, 569, 664, 733, 1358, 1496, 1769, 2171
TaiI ACGT 2 cut(s) 748, 1782
TaqI TCGA 6 cut(s) 33, 98, 156, 892, 1075, 1267
TauI GCSGC 1 cut(s) 1149
Tru1I TTAA 7 cut(s) 149, 273, 935, 1247, 1283, 1806, 2166
Tru9I TTAA 7 cut(s) 149, 273, 935, 1247, 1283, 1806, 2166
TscAI CASTG 3 cut(s) 498, 870, 2176
TseFI GTSAC 2 cut(s) 1337, 1418
TseI GCWGC 4 cut(s) 1676, 1721, 1834, 2131
Tsp45I GTSAC 2 cut(s) 1337, 1418
TspGWI ACGGA 4 cut(s) 253, 1079, 2000, 2009
TspRI CASTG 3 cut(s) 498, 870, 2176
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 7 cut(s) 323, 496, 578, 915, 1471, 1479, 2283
VspI ATTAAT 1 cut(s) 1806
XagI CCTNNNNNAGG 1 cut(s) 503
XapI RAATTY 7 cut(s) 100, 424, 1045, 2025, 2218, 2254, 2327
XbaI TCTAGA 3 cut(s) 455, 1594, 2224
XceI RCATGY 5 cut(s) 337, 1062, 1184, 1562, 2406
XcmI CCANNNNNNNNNTGG 1 cut(s) 1526
XhoI CTCGAG 1 cut(s) 1074
XmaJI CCTAGG 1 cut(s) 1816
XmiI GTMKAC 2 cut(s) 33, 2243
XmnI GAANNNNTTC 2 cut(s) 411, 1083
XspI CTAG 8 cut(s) 456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.