Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Forward (+)

73410864 .. 73411535

Gene Structure 672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG524100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGCAAAAGATGGTGATCAGGCTCTCTGTGCACGACGAGAGGTCTCGATCCAAGGCAATGAGGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCCACTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACTTCTCAGAAAAAGCGTCAAGCGTGCTGACGTCGTCAGTGTGAGCCCTGTCAAAGAGGAGGAGAAGAAGAAGGAGGAGAAGAAGGAGGAGCCTAAAGTTGAGAAGAAGGAGGCGCCTAAAGTTGAGCAAATCATCTTCGGATGTCCTCAGACTTACCCATGCCAGTGCCCGCCATATATATGTACGTACCAGTGCTATGAGCCAAGCCCCAGTTGCTCCATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

7.53

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	45
AcyI	GRCGYC	2 cut(s)	198, 281
AfaI	GTAC	2 cut(s)	352, 356
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	36, 338
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	7, 77
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	258, 282
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	17
BsaHI	GRCGYC	2 cut(s)	198, 281
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	4 cut(s)	114, 331, 358, 378
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	314
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	187, 329
BseNI	ACTGG	4 cut(s)	114, 331, 358, 378
BseRI	GAGGAG	4 cut(s)	239, 242, 257, 269
BseSI	GKGCMC	2 cut(s)	36, 338
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	36, 215, 338
Bsp143I	GATC	2 cut(s)	18, 50
BspACI	CCGC	1 cut(s)	338
BspCNI	CTCAG	2 cut(s)	186, 328
BspLI	GGNNCC	2 cut(s)	258, 282
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	114, 331, 358, 378
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	18, 50
BssNI	GRCGYC	2 cut(s)	198, 281
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	198, 281
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	192, 338
BstDEI	CTNAG	2 cut(s)	173, 315
BstF5I	GGATG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	21, 53
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	18, 50
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 381
BstSLI	GKGCMC	2 cut(s)	36, 338
BstSNI	TACGTA	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	4 cut(s)	107, 211, 338, 365
Cac8I	GCNNGC	2 cut(s)	192, 338
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	351, 355
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	5 cut(s)	25, 213, 259, 370, 375
CviKI_1	RGCY	5 cut(s)	25, 213, 259, 370, 375
CviQI	GTAC	2 cut(s)	351, 355
DdeI	CTNAG	2 cut(s)	173, 315
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	2 cut(s)	20, 52
DpnII	GATC	2 cut(s)	18, 50
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	215
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	330
FaiI	YATR	6 cut(s)	328, 343, 345, 347, 349, 366
FatI	CATG	1 cut(s)	326
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	215
GlaI	GCGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	284
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	2 cut(s)	198, 281
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 308, 318
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	41, 203
HpyAV	CCTTC	3 cut(s)	232, 244, 268
HpyCH4IV	ACGT	2 cut(s)	198, 353
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 381
HpyF3I	CTNAG	2 cut(s)	173, 315
HpySE526I	ACGT	2 cut(s)	198, 353
Hsp92I	GRCGYC	2 cut(s)	198, 281
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	1 cut(s)	281
KasI	GGCGCC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 50
LmnI	GCTCC	2 cut(s)	256, 389
LpnPI	CCDG	7 cut(s)	7, 95, 120, 228, 344, 371, 391
MaeII	ACGT	2 cut(s)	198, 353
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	20, 52
MboI	GATC	2 cut(s)	18, 50
MboII	GAAGA	5 cut(s)	244, 247, 259, 283, 295
MhlI	GDGCHC	3 cut(s)	36, 215, 338
MluCI	AATT	1 cut(s)	123
Mly113I	GGCGCC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	36, 57, 217, 220, 235, 247, 271, 324
MslI	CAYNNNNRTG	2 cut(s)	331, 346
MwoI	GCNNNNNNNGC	2 cut(s)	31, 381
NarI	GGCGCC	1 cut(s)	281
NdeII	GATC	2 cut(s)	18, 50
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	2 cut(s)	258, 282
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	258, 282
PspPI	GGNCC	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	352, 356
RsaNI	GTAC	2 cut(s)	351, 355
RseI	CAYNNNNRTG	2 cut(s)	331, 346
Sau3AI	GATC	2 cut(s)	18, 50
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	36, 215, 338
SetI	ASST	3 cut(s)	47, 201, 356
SfoI	GGCGCC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	331, 346
SnaBI	TACGTA	1 cut(s)	354
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	338
SspDI	GGCGCC	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	201, 356
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	4 cut(s)	114, 211, 338, 365
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	4 cut(s)	114, 211, 338, 365
Tth111I	GACNNNGTC	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	118
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.