transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290 |
| fragaria_vesca | FvH4_6g40280 FvH4_6g40280 |
| malus_domestica | MD09G1133200.v1.1 |
| prunus_persica | Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1 |
| pyrus_communis | pycom09g05430 pycom17g11110 |
| rosa_chinensis | RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471 |
| rosa_laevigata | RLG00000020837 RLG00000020839 |
| rosa_multiflora | Rmu_sc0006608.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130 |
| rosa_rugosa | Rorug02G0447200 |
| rosa_samantha | Rh2BG524100 Rh2CG498300 Rh2CG498400 |
| rosa_wichuraiana | Rw2G042200 Rw2G042210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 220 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AjnI | CCWGG | 1 cut(s) | 47 |
| AluBI | AGCT | 2 cut(s) | 59, 286 |
| AluI | AGCT | 2 cut(s) | 59, 286 |
| Alw21I | GWGCWC | 1 cut(s) | 359 |
| Alw44I | GTGCAC | 1 cut(s) | 355 |
| AoxI | GGCC | 2 cut(s) | 45, 51 |
| ApaLI | GTGCAC | 1 cut(s) | 355 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 313, 345 |
| AspS9I | GGNCC | 2 cut(s) | 45, 51 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 214, 331 |
| BaeGI | GKGCMC | 1 cut(s) | 359 |
| BanII | GRGCYC | 1 cut(s) | 215 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| Bbv12I | GWGCWC | 1 cut(s) | 359 |
| BbvCI | CCTCAGC | 1 cut(s) | 195 |
| BccI | CCATC | 1 cut(s) | 77 |
| BciT130I | CCWGG | 1 cut(s) | 49 |
| BclI | TGATCA | 1 cut(s) | 18 |
| BfmI | CTRYAG | 2 cut(s) | 69, 287 |
| Bme1390I | CCNGG | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 2 cut(s) | 45, 51 |
| BmrFI | CCNGG | 1 cut(s) | 49 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 297 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 220 |
| BseBI | CCWGG | 1 cut(s) | 49 |
| BseDI | CCNNGG | 2 cut(s) | 48, 297 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 220 |
| BseMII | CTCAG | 2 cut(s) | 108, 186 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseSI | GKGCMC | 1 cut(s) | 359 |
| BsgI | GTGCAG | 1 cut(s) | 264 |
| BshFI | GGCC | 2 cut(s) | 47, 53 |
| BsiHKAI | GWGCWC | 1 cut(s) | 359 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 220 |
| BsnI | GGCC | 2 cut(s) | 47, 53 |
| Bsp1286I | GDGCHC | 2 cut(s) | 215, 359 |
| Bsp143I | GATC | 1 cut(s) | 18 |
| Bsp19I | CCATGG | 1 cut(s) | 297 |
| BspANI | GGCC | 2 cut(s) | 47, 53 |
| BspCNI | CTCAG | 2 cut(s) | 107, 187 |
| BspMAI | CTGCAG | 1 cut(s) | 73 |
| BspQI | GCTCTTC | 1 cut(s) | 263 |
| BssECI | CCNNGG | 2 cut(s) | 48, 297 |
| BssMI | GATC | 1 cut(s) | 18 |
| BssT1I | CCWWGG | 1 cut(s) | 297 |
| Bst2UI | CCWGG | 1 cut(s) | 49 |
| Bst4CI | ACNGT | 1 cut(s) | 291 |
| Bst6I | CTCTTC | 1 cut(s) | 263 |
| BstC8I | GCNNGC | 2 cut(s) | 275, 279 |
| BstDEI | CTNAG | 3 cut(s) | 94, 173, 195 |
| BstDSI | CCRYGG | 1 cut(s) | 297 |
| BstKTI | GATC | 1 cut(s) | 21 |
| BstMBI | GATC | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 283 |
| BstNI | CCWGG | 1 cut(s) | 49 |
| BstSCI | CCNGG | 1 cut(s) | 47 |
| BstSFI | CTRYAG | 2 cut(s) | 69, 287 |
| BstSLI | GKGCMC | 1 cut(s) | 359 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BsuRI | GGCC | 2 cut(s) | 47, 53 |
| BtgI | CCRYGG | 1 cut(s) | 297 |
| Cac8I | GCNNGC | 2 cut(s) | 275, 279 |
| Cfr13I | GGNCC | 2 cut(s) | 45, 51 |
| CviAII | CATG | 2 cut(s) | 35, 298 |
| CviJI | RGCY | 6 cut(s) | 47, 53, 59, 213, 277, 286 |
| CviKI_1 | RGCY | 6 cut(s) | 47, 53, 59, 213, 277, 286 |
| DdeI | CTNAG | 3 cut(s) | 94, 173, 195 |
| DpnI | GATC | 1 cut(s) | 20 |
| DpnII | GATC | 1 cut(s) | 18 |
| Eam1104I | CTCTTC | 1 cut(s) | 263 |
| EarI | CTCTTC | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 1 cut(s) | 297 |
| Eco24I | GRGCYC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 1 cut(s) | 47 |
| EcoT14I | CCWWGG | 1 cut(s) | 297 |
| EcoT38I | GRGCYC | 1 cut(s) | 215 |
| ErhI | CCWWGG | 1 cut(s) | 297 |
| FaeI | CATG | 2 cut(s) | 38, 301 |
| FaiI | YATR | 8 cut(s) | 36, 62, 192, 294, 299, 315, 336, 353 |
| FatI | CATG | 2 cut(s) | 34, 297 |
| FbaI | TGATCA | 1 cut(s) | 18 |
| FriOI | GRGCYC | 1 cut(s) | 215 |
| HaeIII | GGCC | 2 cut(s) | 47, 53 |
| Hin1II | CATG | 2 cut(s) | 38, 301 |
| HphI | GGTGA | 3 cut(s) | 28, 214, 331 |
| Hpy166II | GTNNAC | 2 cut(s) | 91, 357 |
| Hpy8I | GTNNAC | 2 cut(s) | 91, 357 |
| HpyAV | CCTTC | 2 cut(s) | 134, 250 |
| HpyCH4III | ACNGT | 1 cut(s) | 291 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 71, 281, 357 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 283 |
| HpyF3I | CTNAG | 3 cut(s) | 94, 173, 195 |
| Hsp92II | CATG | 2 cut(s) | 38, 301 |
| Ksp22I | TGATCA | 1 cut(s) | 18 |
| Kzo9I | GATC | 1 cut(s) | 18 |
| LguI | GCTCTTC | 1 cut(s) | 263 |
| LpnPI | CCDG | 4 cut(s) | 34, 61, 228, 291 |
| MaeIII | GTNAC | 1 cut(s) | 319 |
| MalI | GATC | 1 cut(s) | 20 |
| MboI | GATC | 1 cut(s) | 18 |
| MboII | GAAGA | 5 cut(s) | 76, 241, 277, 280, 350 |
| MhlI | GDGCHC | 2 cut(s) | 215, 359 |
| MnlI | CCTC | 7 cut(s) | 121, 190, 214, 229, 241, 253, 318 |
| MspR9I | CCNGG | 1 cut(s) | 49 |
| MvaI | CCWGG | 1 cut(s) | 49 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 283 |
| NcoI | CCATGG | 1 cut(s) | 297 |
| NdeII | GATC | 1 cut(s) | 18 |
| NlaIII | CATG | 2 cut(s) | 38, 301 |
| NmuCI | GTSAC | 1 cut(s) | 319 |
| PciSI | GCTCTTC | 1 cut(s) | 263 |
| Psp6I | CCWGG | 1 cut(s) | 47 |
| PspGI | CCWGG | 1 cut(s) | 47 |
| PspPI | GGNCC | 2 cut(s) | 45, 51 |
| PstI | CTGCAG | 1 cut(s) | 73 |
| SapI | GCTCTTC | 1 cut(s) | 263 |
| Sau3AI | GATC | 1 cut(s) | 18 |
| Sau96I | GGNCC | 2 cut(s) | 45, 51 |
| ScrFI | CCNGG | 1 cut(s) | 49 |
| SduI | GDGCHC | 2 cut(s) | 215, 359 |
| SetI | ASST | 5 cut(s) | 15, 61, 132, 201, 288 |
| SfcI | CTRYAG | 2 cut(s) | 69, 287 |
| StyD4I | CCNGG | 1 cut(s) | 47 |
| StyI | CCWWGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 1 cut(s) | 291 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TseFI | GTSAC | 1 cut(s) | 319 |
| Tsp45I | GTSAC | 1 cut(s) | 319 |
| TspDTI | ATGAA | 4 cut(s) | 17, 54, 77, 351 |
| VneI | GTGCAC | 1 cut(s) | 355 |