Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Reverse (-)

15103538 .. 15104693

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGCAAAAGATGGTGATCAGGCTCTCTTTGCACGACGAGAGGTCTCGATCCAAGGCAATGAGGACAGCAGTCGGAGTAGATGGGGTGGATTCAGCAAGTCTGCTATTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACGACTCAGAAAAAGAGTCAAGTGCGCTAATACTATGGTCGTCAGTGTGAGCCCTGTCAAAGAGGAGGGGAAGAAGAAGGAGGAGAAGAAAGAGGAGAAGAAGGAGGAGCCTAAAGTTGAGCAAATCATCTTCGGATGTCCTCAGACTTACCCATGCCAGTGCCCGCCATATATATGTACGTACCAGTGCTATGAGCCAAGCCCCAGTTGCTCCATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.58

Weight (kDa)

8.44

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	346, 350
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	221
BccI	CCATC	2 cut(s)	7, 77
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	366
BoxI	GACNNNNGTC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	3 cut(s)	325, 352, 372
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	308
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	187, 323
BseNI	ACTGG	3 cut(s)	325, 352, 372
BseRI	GAGGAG	4 cut(s)	245, 263, 275, 287
BseSI	GKGCMC	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	221, 332
Bsp143I	GATC	2 cut(s)	18, 50
BspACI	CCGC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	186, 322
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	325, 352, 372
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	18, 50
BssT1I	CCWWGG	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	173, 309
BstF5I	GGATG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	2 cut(s)	21, 53
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	18, 50
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 375
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	332
BstSNI	TACGTA	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	3 cut(s)	217, 332, 359
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	345, 349
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	5 cut(s)	25, 219, 277, 364, 369
CviKI_1	RGCY	5 cut(s)	25, 219, 277, 364, 369
CviQI	GTAC	2 cut(s)	345, 349
DdeI	CTNAG	2 cut(s)	173, 309
DpnI	GATC	2 cut(s)	20, 52
DpnII	GATC	2 cut(s)	18, 50
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	324
FaiI	YATR	7 cut(s)	203, 322, 337, 339, 341, 343, 360
FatI	CATG	1 cut(s)	320
FauI	CCCGC	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	221
GlaI	GCGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	3 cut(s)	92, 171, 183
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	77, 176, 302, 312
Hpy188III	TCNNGA	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	238, 262
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 375
HpyF3I	CTNAG	2 cut(s)	173, 309
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	324
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 50
LmnI	GCTCC	2 cut(s)	274, 383
LpnPI	CCDG	6 cut(s)	7, 120, 234, 338, 365, 385
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	20, 52
MboI	GATC	2 cut(s)	18, 50
MboII	GAAGA	5 cut(s)	250, 253, 265, 277, 289
MhlI	GDGCHC	2 cut(s)	221, 332
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	165, 192
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	36, 57, 223, 226, 241, 253, 265, 318
MslI	CAYNNNNRTG	2 cut(s)	325, 340
MwoI	GCNNNNNNNGC	2 cut(s)	31, 375
NdeII	GATC	2 cut(s)	18, 50
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	165, 191
PpsI	GAGTC	2 cut(s)	165, 191
Ppu21I	YACGTR	1 cut(s)	348
PshAI	GACNNNNGTC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	2 cut(s)	346, 350
RsaNI	GTAC	2 cut(s)	345, 349
RseI	CAYNNNNRTG	2 cut(s)	325, 340
Sau3AI	GATC	2 cut(s)	18, 50
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	165, 192
SduI	GDGCHC	2 cut(s)	221, 332
SetI	ASST	2 cut(s)	47, 350
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	325, 340
SnaBI	TACGTA	1 cut(s)	348
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	3 cut(s)	217, 332, 359
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	217, 332, 359
VpaK11BI	GGWCC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.