transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290 |
| fragaria_vesca | FvH4_6g40280 FvH4_6g40280 |
| malus_domestica | MD09G1133200.v1.1 |
| prunus_persica | Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1 |
| pyrus_communis | pycom09g05430 pycom17g11110 |
| rosa_chinensis | RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471 |
| rosa_laevigata | RLG00000020837 RLG00000020839 |
| rosa_multiflora | Rmu_sc0006608.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130 |
| rosa_rugosa | Rorug02G0447200 |
| rosa_samantha | Rh2BG524100 Rh2CG498300 Rh2CG498400 |
| rosa_wichuraiana | Rw2G042200 Rw2G042210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 226 |
| AgsI | TTSAA | 1 cut(s) | 193 |
| AluBI | AGCT | 3 cut(s) | 59, 189, 292 |
| AluI | AGCT | 3 cut(s) | 59, 189, 292 |
| AoxI | GGCC | 2 cut(s) | 45, 51 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 319, 351 |
| AspS9I | GGNCC | 1 cut(s) | 45 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 220, 337 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| BbvCI | CCTCAGC | 1 cut(s) | 201 |
| BccI | CCATC | 2 cut(s) | 32, 77 |
| BclI | TGATCA | 1 cut(s) | 18 |
| BfmI | CTRYAG | 2 cut(s) | 69, 293 |
| BmgT120I | GGNCC | 1 cut(s) | 45 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 1 cut(s) | 201 |
| BsaJI | CCNNGG | 1 cut(s) | 48 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 226 |
| BseDI | CCNNGG | 1 cut(s) | 48 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 226 |
| BseMII | CTCAG | 2 cut(s) | 108, 192 |
| BseRI | GAGGAG | 1 cut(s) | 281 |
| BsgI | GTGCAG | 1 cut(s) | 270 |
| BshFI | GGCC | 2 cut(s) | 47, 53 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 226 |
| BsnI | GGCC | 2 cut(s) | 47, 53 |
| Bsp143I | GATC | 1 cut(s) | 18 |
| BspANI | GGCC | 2 cut(s) | 47, 53 |
| BspCNI | CTCAG | 2 cut(s) | 107, 193 |
| BspMAI | CTGCAG | 1 cut(s) | 73 |
| BspQI | GCTCTTC | 1 cut(s) | 269 |
| BssECI | CCNNGG | 1 cut(s) | 48 |
| BssMI | GATC | 1 cut(s) | 18 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst4CI | ACNGT | 1 cut(s) | 297 |
| Bst6I | CTCTTC | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 3 cut(s) | 198, 281, 285 |
| BstDEI | CTNAG | 3 cut(s) | 94, 173, 201 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 224 |
| BstKTI | GATC | 1 cut(s) | 21 |
| BstMBI | GATC | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 289 |
| BstNSI | RCATGY | 1 cut(s) | 200 |
| BstSFI | CTRYAG | 2 cut(s) | 69, 293 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BsuRI | GGCC | 2 cut(s) | 47, 53 |
| Cac8I | GCNNGC | 3 cut(s) | 198, 281, 285 |
| Cfr13I | GGNCC | 1 cut(s) | 45 |
| CviAII | CATG | 3 cut(s) | 35, 197, 304 |
| CviJI | RGCY | 7 cut(s) | 47, 53, 59, 189, 219, 283, 292 |
| CviKI_1 | RGCY | 7 cut(s) | 47, 53, 59, 189, 219, 283, 292 |
| DdeI | CTNAG | 3 cut(s) | 94, 173, 201 |
| DpnI | GATC | 1 cut(s) | 20 |
| DpnII | GATC | 1 cut(s) | 18 |
| Eam1104I | CTCTTC | 1 cut(s) | 269 |
| EarI | CTCTTC | 1 cut(s) | 269 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 224 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 3 cut(s) | 38, 200, 307 |
| FaiI | YATR | 9 cut(s) | 36, 62, 198, 300, 305, 321, 342, 359, 361 |
| FatI | CATG | 3 cut(s) | 34, 196, 303 |
| FbaI | TGATCA | 1 cut(s) | 18 |
| HaeIII | GGCC | 2 cut(s) | 47, 53 |
| Hin1II | CATG | 3 cut(s) | 38, 200, 307 |
| HindIII | AAGCTT | 1 cut(s) | 187 |
| HphI | GGTGA | 3 cut(s) | 28, 220, 337 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyAV | CCTTC | 3 cut(s) | 36, 134, 345 |
| HpyCH4III | ACNGT | 1 cut(s) | 297 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 71, 287, 363 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 289 |
| HpyF3I | CTNAG | 3 cut(s) | 94, 173, 201 |
| Hsp92II | CATG | 3 cut(s) | 38, 200, 307 |
| Ksp22I | TGATCA | 1 cut(s) | 18 |
| Kzo9I | GATC | 1 cut(s) | 18 |
| LguI | GCTCTTC | 1 cut(s) | 269 |
| LpnPI | CCDG | 1 cut(s) | 297 |
| MaeIII | GTNAC | 1 cut(s) | 325 |
| MalI | GATC | 1 cut(s) | 20 |
| MboI | GATC | 1 cut(s) | 18 |
| MboII | GAAGA | 4 cut(s) | 76, 283, 286, 356 |
| MnlI | CCTC | 7 cut(s) | 121, 196, 220, 235, 247, 259, 324 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 289 |
| NdeII | GATC | 1 cut(s) | 18 |
| NlaIII | CATG | 3 cut(s) | 38, 200, 307 |
| NmuCI | GTSAC | 1 cut(s) | 325 |
| NspI | RCATGY | 1 cut(s) | 200 |
| PaeI | GCATGC | 1 cut(s) | 200 |
| PciSI | GCTCTTC | 1 cut(s) | 269 |
| PspPI | GGNCC | 1 cut(s) | 45 |
| PstI | CTGCAG | 1 cut(s) | 73 |
| SapI | GCTCTTC | 1 cut(s) | 269 |
| Sau3AI | GATC | 1 cut(s) | 18 |
| Sau96I | GGNCC | 1 cut(s) | 45 |
| SetI | ASST | 6 cut(s) | 15, 61, 132, 191, 207, 294 |
| SfcI | CTRYAG | 2 cut(s) | 69, 293 |
| SphI | GCATGC | 1 cut(s) | 200 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 1 cut(s) | 297 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TseFI | GTSAC | 1 cut(s) | 325 |
| Tsp45I | GTSAC | 1 cut(s) | 325 |
| TspDTI | ATGAA | 3 cut(s) | 17, 77, 357 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 224 |
| XceI | RCATGY | 1 cut(s) | 200 |