Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Forward (+)

68442112 .. 68442870

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGCAAAAGATGGTGATCAGGCTCTCTGTGCACGACGAGAGGTCTCGATCCAAGGCAATGAGGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCCACTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACTTCTCAGAAAAAACGTCAAGCGTGCTGAAGTCGTCAGTGTGAGCCCTGTCAAAGAGGAGGAGAAGAAGAAGGAGGAGCCTAAAGTTGAGAAGAAGGAGGCGCCTAAAGTTGAGCAAATCATCTTCGGATGTCCTCAGACTTACCCATGCCAGTGCCCGCCATATATATGTACGTACCAGTGCTATGAGCCAAGCCCCAGTTGCTCCATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.25

Weight (kDa)

7.54

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	2 cut(s)	340, 344
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	36, 326
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	7, 77
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	246, 270
BmrI	ACTGGG	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	4 cut(s)	114, 319, 346, 366
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	302
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	187, 317
BseNI	ACTGG	4 cut(s)	114, 319, 346, 366
BseRI	GAGGAG	3 cut(s)	239, 242, 257
BseSI	GKGCMC	2 cut(s)	36, 326
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	36, 215, 326
Bsp143I	GATC	2 cut(s)	18, 50
BspACI	CCGC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	186, 316
BspLI	GGNNCC	2 cut(s)	246, 270
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	114, 319, 346, 366
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	18, 50
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	192, 326
BstDEI	CTNAG	2 cut(s)	173, 303
BstF5I	GGATG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	21, 53
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	18, 50
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 369
BstSLI	GKGCMC	2 cut(s)	36, 326
BstSNI	TACGTA	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	4 cut(s)	107, 211, 326, 353
Cac8I	GCNNGC	2 cut(s)	192, 326
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	339, 343
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	5 cut(s)	25, 213, 247, 358, 363
CviKI_1	RGCY	5 cut(s)	25, 213, 247, 358, 363
CviQI	GTAC	2 cut(s)	339, 343
DdeI	CTNAG	2 cut(s)	173, 303
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	2 cut(s)	20, 52
DpnII	GATC	2 cut(s)	18, 50
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	215
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	318
FaiI	YATR	6 cut(s)	316, 331, 333, 335, 337, 354
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	309
FriOI	GRGCYC	1 cut(s)	215
GlaI	GCGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	272
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 296, 306
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	232, 256
HpyCH4IV	ACGT	2 cut(s)	183, 341
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 369
HpyF3I	CTNAG	2 cut(s)	173, 303
HpySE526I	ACGT	2 cut(s)	183, 341
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 50
LmnI	GCTCC	2 cut(s)	244, 377
LpnPI	CCDG	7 cut(s)	7, 95, 120, 228, 332, 359, 379
MaeII	ACGT	2 cut(s)	183, 341
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	20, 52
MboI	GATC	2 cut(s)	18, 50
MboII	GAAGA	4 cut(s)	244, 247, 271, 283
MhlI	GDGCHC	3 cut(s)	36, 215, 326
MluCI	AATT	1 cut(s)	123
Mly113I	GGCGCC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	36, 57, 217, 220, 235, 259, 312
MslI	CAYNNNNRTG	2 cut(s)	319, 334
MwoI	GCNNNNNNNGC	2 cut(s)	31, 369
NarI	GGCGCC	1 cut(s)	269
NdeII	GATC	2 cut(s)	18, 50
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	2 cut(s)	246, 270
PfeI	GAWTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	246, 270
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	2 cut(s)	340, 344
RsaNI	GTAC	2 cut(s)	339, 343
RseI	CAYNNNNRTG	2 cut(s)	319, 334
Sau3AI	GATC	2 cut(s)	18, 50
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	36, 215, 326
SetI	ASST	3 cut(s)	47, 186, 344
SfoI	GGCGCC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	319, 334
SnaBI	TACGTA	1 cut(s)	342
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	326
SspDI	GGCGCC	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	186, 344
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	4 cut(s)	114, 211, 326, 353
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	4 cut(s)	114, 211, 326, 353
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.