AT5G48290

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006446
Physical Location & Seq
Forward (+)
19568760 .. 19569866
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48290.1

Sequence Viewer

Length: 546 bp
ATGAAGCAAAAGATCTTGATAAGAGTGACTATGACCGATGACAAAACCCGAGCAAAAGCAATGACAAAAGCAGTTCAGTTTAAAGGCGTGTCAGCCGTGGAAATAAAAGGCGATCACAGGAACCAGATAGAGGTAACCGGCGTTGAAGTTGATATGATCCCTCTTATCCAAATACTCAGAAAGAAGGTAGCGTTCGCAGAGCTTGTGAGCGTGACCAAAGTTGAACCACCAAAGAAAGAAGACGAGAAGAAAGGAGGGGACGGAAAGGGTGCAGAGGGAAAAGGCGGTGACCAAAAAGGTGGCGATAAGAAAGGGCCAGATGACAAGGAACCTCCGGAGCCAAAACCTGTGCCGTGTTATCCATGGCCTCTGCAGGGATACGGTGTACCTTCCTCCTTTCCTCATCAAGGATACGGTGTGCCTTCCACCTTTCCCCAGGGAGACGGTGTACCTTCCTCGTTTCCATACCCGTGCCATCCGGCACATCCCTACAATGATATAGGGGAACCCGTTTACAATCACGAACCCAATTGCAAAATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.76

Weight (kDa)

8.31

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 151
AfaI GTAC 2 cut(s) 387, 450
AfiI CCNNNNNNNGG 3 cut(s) 130, 374, 407
AgsI TTSAA 2 cut(s) 146, 224
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 2 cut(s) 314, 365
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 246
BccI CCATC 1 cut(s) 483
BceAI ACGGC 2 cut(s) 80, 337
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 2 cut(s) 371, 404
BcoDI GTCTC 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 371
BfuI GTATCC 2 cut(s) 371, 404
BglII AGATCT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 4 cut(s) 122, 330, 339, 507
BmrFI CCNGG 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 246
BsaJI CCNNGG 4 cut(s) 96, 362, 435, 436
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 374, 407
Bse118I RCCGGY 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 96, 362, 435, 436
BseGI GGATG 2 cut(s) 475, 484
BseLI CCNNNNNNNGG 3 cut(s) 130, 374, 407
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 2 cut(s) 316, 367
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 3 cut(s) 138, 335, 479
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 130, 374, 407
BsmAI GTCTC 1 cut(s) 435
BsmBI CGTCTC 1 cut(s) 435
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 2 cut(s) 316, 367
BsoBI CYCGRG 1 cut(s) 48
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 12, 112, 156
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 1 cut(s) 285
BspANI GGCC 2 cut(s) 316, 367
BspCNI CTCAG 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 334
BspLI GGNNCC 4 cut(s) 122, 330, 339, 507
BspMAI CTGCAG 1 cut(s) 375
BspPI GGATC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 4 cut(s) 96, 362, 435, 436
BssMI GATC 3 cut(s) 12, 112, 156
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 383, 416, 446
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 2 cut(s) 96, 362
BstEII GGTNACC 2 cut(s) 133, 287
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 475, 484
BstKTI GATC 3 cut(s) 15, 115, 159
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 3 cut(s) 12, 112, 156
BstNI CCWGG 1 cut(s) 437
BstPI GGTNACC 2 cut(s) 133, 287
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 371
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 12
BsuI GTATCC 2 cut(s) 371, 404
BsuRI GGCC 2 cut(s) 316, 367
BtgI CCRYGG 2 cut(s) 96, 362
BtsCI GGATG 2 cut(s) 475, 484
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 2 cut(s) 386, 449
CviAII CATG 2 cut(s) 363, 541
CviJI RGCY 5 cut(s) 95, 202, 316, 340, 367
CviKI_1 RGCY 5 cut(s) 95, 202, 316, 340, 367
CviQI GTAC 2 cut(s) 386, 449
DdeI CTNAG 1 cut(s) 176
DpnI GATC 3 cut(s) 14, 114, 158
DpnII GATC 3 cut(s) 12, 112, 156
DraI TTTAAA 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 48
Eco91I GGTNACC 2 cut(s) 133, 287
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO65I GGTNACC 2 cut(s) 133, 287
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 2 cut(s) 366, 544
FaiI YATR 6 cut(s) 32, 155, 364, 466, 500, 542
FaqI GGGAC 1 cut(s) 272
FatI CATG 2 cut(s) 362, 540
FokI GGATG 2 cut(s) 462, 471
HaeIII GGCC 2 cut(s) 316, 367
HapII CCGG 3 cut(s) 138, 335, 479
Hin1II CATG 2 cut(s) 366, 544
HpaII CCGG 3 cut(s) 138, 335, 479
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 3 cut(s) 386, 449, 514
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 3 cut(s) 16, 335, 521
Hpy8I GTNNAC 3 cut(s) 386, 449, 514
HpyAV CCTTC 4 cut(s) 178, 399, 432, 462
HpyCH4III ACNGT 3 cut(s) 383, 416, 446
HpyCH4V TGCA 3 cut(s) 272, 373, 534
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 366, 544
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 12, 112, 156
LmnI GCTCC 1 cut(s) 337
MaeIII GTNAC 4 cut(s) 25, 133, 211, 287
MalI GATC 3 cut(s) 14, 114, 158
MboI GATC 3 cut(s) 12, 112, 156
MboII GAAGA 2 cut(s) 251, 259
MfeI CAATTG 1 cut(s) 529
MflI RGATCY 1 cut(s) 12
MluCI AATT 1 cut(s) 529
MnlI CCTC 9 cut(s) 124, 171, 248, 268, 342, 378, 403, 411, 466
MroI TCCGGA 1 cut(s) 334
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 469
MspI CCGG 3 cut(s) 138, 335, 479
MspR9I CCNGG 1 cut(s) 437
MunI CAATTG 1 cut(s) 529
MvaI CCWGG 1 cut(s) 437
NcoI CCATGG 1 cut(s) 362
NdeII GATC 3 cut(s) 12, 112, 156
NlaIII CATG 2 cut(s) 366, 544
NlaIV GGNNCC 4 cut(s) 122, 330, 339, 507
NmuCI GTSAC 3 cut(s) 25, 211, 287
PasI CCCWGGG 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 435
PspEI GGTNACC 2 cut(s) 133, 287
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 122, 330, 339, 507
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 2 cut(s) 387, 450
RsaNI GTAC 2 cut(s) 386, 449
RseI CAYNNNNRTG 1 cut(s) 469
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 3 cut(s) 12, 112, 156
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 437
SetI ASST 9 cut(s) 135, 189, 204, 301, 334, 349, 391, 431, 454
SfcI CTRYAG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 469
Sse9I AATT 1 cut(s) 529
SsiI CCGC 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 3 cut(s) 383, 416, 446
TaqII GACCGA 1 cut(s) 50
TasI AATT 1 cut(s) 529
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 3 cut(s) 25, 211, 287
Tsp45I GTSAC 3 cut(s) 25, 211, 287
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 276
XagI CCTNNNNNAGG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.