Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006608.1

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Forward (+)

24420 .. 25094

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006608.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgaagcaaaagatggtgatcaggctctctgtgcacgacgagaggtctcgatccaaggcaatgaggacagcagttggagttgatggggtggattcagcaagtctgctattggacaaggaccaaattgaagtaacaggaaatgatgttgatgtggttttgctcacaacacgactcagaaaaagagtcaagtgcgctaatcctatggtcgtcagtgtgagccctgtcaaagaggaggagaagaaacaggagaagaaggaggagcctaaagttgagaagaaggaggcgcctaaagttgagcaaatcatcttcggatgtcctcagacttacccatgccagtgcccgccatatatatgtacgtaccagtgctatgagccaagccccagttgctccattctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.9

Weight (kDa)

8.44

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	355, 359
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	194, 286
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	36, 341
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	7, 77
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	261, 285
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	3 cut(s)	334, 361, 381
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	317
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	187, 332
BseNI	ACTGG	3 cut(s)	334, 361, 381
BseRI	GAGGAG	3 cut(s)	245, 248, 272
BseSI	GKGCMC	2 cut(s)	36, 341
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	36, 221, 341
Bsp143I	GATC	2 cut(s)	18, 50
BspACI	CCGC	1 cut(s)	341
BspCNI	CTCAG	2 cut(s)	186, 331
BspLI	GGNNCC	2 cut(s)	261, 285
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	334, 361, 381
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	18, 50
BssNI	GRCGYC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	173, 318
BstF5I	GGATG	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	194, 286
BstKTI	GATC	2 cut(s)	21, 53
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	18, 50
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 384
BstSLI	GKGCMC	2 cut(s)	36, 341
BstSNI	TACGTA	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	3 cut(s)	217, 341, 368
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	2 cut(s)	194, 286
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	354, 358
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	5 cut(s)	25, 219, 262, 373, 378
CviKI_1	RGCY	5 cut(s)	25, 219, 262, 373, 378
CviQI	GTAC	2 cut(s)	354, 358
DdeI	CTNAG	2 cut(s)	173, 318
DinI	GGCGCC	1 cut(s)	285
DpnI	GATC	2 cut(s)	20, 52
DpnII	GATC	2 cut(s)	18, 50
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	221
EgeI	GGCGCC	1 cut(s)	285
EheI	GGCGCC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	333
FaiI	YATR	7 cut(s)	203, 331, 346, 348, 350, 352, 369
FatI	CATG	1 cut(s)	329
FauI	CCCGC	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	221
GlaI	GCGC	2 cut(s)	193, 285
HaeII	RGCGCY	1 cut(s)	287
HhaI	GCGC	2 cut(s)	194, 286
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	333
Hin6I	GCGC	2 cut(s)	192, 284
HinP1I	GCGC	2 cut(s)	192, 284
HinfI	GANTC	3 cut(s)	92, 171, 183
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 311, 321
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	247, 271
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 384
HpyF3I	CTNAG	2 cut(s)	173, 318
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	333
HspAI	GCGC	2 cut(s)	192, 284
KasI	GGCGCC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 50
LmnI	GCTCC	2 cut(s)	259, 392
LpnPI	CCDG	7 cut(s)	7, 120, 230, 234, 347, 374, 394
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	20, 52
MboI	GATC	2 cut(s)	18, 50
MboII	GAAGA	4 cut(s)	250, 262, 286, 298
MhlI	GDGCHC	3 cut(s)	36, 221, 341
MluCI	AATT	1 cut(s)	123
Mly113I	GGCGCC	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	165, 192
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	36, 57, 223, 226, 250, 274, 327
MslI	CAYNNNNRTG	2 cut(s)	334, 349
MwoI	GCNNNNNNNGC	2 cut(s)	31, 384
NarI	GGCGCC	1 cut(s)	284
NdeII	GATC	2 cut(s)	18, 50
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	2 cut(s)	261, 285
PfeI	GAWTC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	165, 191
PluTI	GGCGCC	1 cut(s)	287
PpsI	GAGTC	2 cut(s)	165, 191
Ppu21I	YACGTR	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	261, 285
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	2 cut(s)	355, 359
RsaNI	GTAC	2 cut(s)	354, 358
RseI	CAYNNNNRTG	2 cut(s)	334, 349
Sau3AI	GATC	2 cut(s)	18, 50
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	165, 192
SduI	GDGCHC	3 cut(s)	36, 221, 341
SetI	ASST	2 cut(s)	47, 359
SfoI	GGCGCC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	334, 349
SnaBI	TACGTA	1 cut(s)	357
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	341
SspDI	GGCGCC	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	3 cut(s)	217, 341, 368
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	217, 341, 368
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.