Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Forward (+)

68481260 .. 68482511

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGCAAAAGGTGGTGATCAGGCTCTCTGTGCACGACGAGAAGTCCCGATCCAAGGCAATGAAGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCCACTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCGCAAGACTTCTCAGAAAAAGCGTCAAGCGTGCTGACGTCGTCAGTGTGAGCCCTGTCAAAGAGGAGGAGAAGAAGAAGGAGGAGAAGAAGGAGGAGCCTAAATTTGAGCAAATCATCGTCGGATGGCCTCAGACTTACCCAGTTGATCCATACCAGTGGTATGATCAGCCAAGCCCCGGTTGCTCCATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.32

Weight (kDa)

6.6

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	45, 302
AcsI	RAATTY	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	55, 338
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	45, 302
AoxI	GGCC	1 cut(s)	287
ApaLI	GTGCAC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	77, 279
BclI	TGATCA	2 cut(s)	18, 325
BcnI	CCSGG	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	54, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 338
Bse1I	ACTGG	3 cut(s)	114, 302, 316
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	54, 337
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	2 cut(s)	55, 338
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	187, 305
BseNI	ACTGG	3 cut(s)	114, 302, 316
BseRI	GAGGAG	4 cut(s)	239, 242, 257, 269
BseSI	GKGCMC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	55, 338
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	36, 215
Bsp143I	GATC	4 cut(s)	18, 50, 307, 325
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	186, 304
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	2 cut(s)	45, 302
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	114, 302, 316
BssECI	CCNNGG	2 cut(s)	54, 337
BssMI	GATC	4 cut(s)	18, 50, 307, 325
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	162, 192
BstDEI	CTNAG	2 cut(s)	173, 291
BstF5I	GGATG	1 cut(s)	290
BstKTI	GATC	4 cut(s)	21, 53, 310, 328
BstMBI	GATC	4 cut(s)	18, 50, 307, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 342
BstSCI	CCNGG	1 cut(s)	337
BstSLI	GKGCMC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	290
BtsIMutI	CAGTG	3 cut(s)	107, 211, 323
Cac8I	GCNNGC	2 cut(s)	162, 192
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	172
CviJI	RGCY	6 cut(s)	25, 213, 259, 289, 331, 336
CviKI_1	RGCY	6 cut(s)	25, 213, 259, 289, 331, 336
DdeI	CTNAG	2 cut(s)	173, 291
DpnI	GATC	4 cut(s)	20, 52, 309, 327
DpnII	GATC	4 cut(s)	18, 50, 307, 325
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	3 cut(s)	313, 324, 353
FaqI	GGGAC	1 cut(s)	31
FbaI	TGATCA	2 cut(s)	18, 325
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 284, 294
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	3 cut(s)	41, 203, 284
HpyAV	CCTTC	2 cut(s)	232, 244
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 342
HpyF3I	CTNAG	2 cut(s)	173, 291
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	198
Ksp22I	TGATCA	2 cut(s)	18, 325
Kzo9I	GATC	4 cut(s)	18, 50, 307, 325
LmnI	GCTCC	2 cut(s)	256, 350
LpnPI	CCDG	7 cut(s)	7, 95, 120, 228, 315, 329, 352
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	4 cut(s)	20, 52, 309, 327
MboI	GATC	4 cut(s)	18, 50, 307, 325
MboII	GAAGA	4 cut(s)	76, 244, 247, 259
MhlI	GDGCHC	2 cut(s)	36, 215
MluCI	AATT	2 cut(s)	123, 263
MmeI	TCCRAC	2 cut(s)	55, 262
MnlI	CCTC	5 cut(s)	217, 220, 235, 247, 300
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	31, 342
NciI	CCSGG	1 cut(s)	339
NdeII	GATC	4 cut(s)	18, 50, 307, 325
NlaIV	GGNNCC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	316
Sau3AI	GATC	4 cut(s)	18, 50, 307, 325
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	36, 215
SetI	ASST	2 cut(s)	15, 201
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	2 cut(s)	123, 263
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	201
TasI	AATT	2 cut(s)	123, 263
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	3 cut(s)	114, 211, 323
TspDTI	ATGAA	2 cut(s)	17, 77
TspRI	CASTG	3 cut(s)	114, 211, 323
Tth111I	GACNNNGTC	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.