transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290 |
| fragaria_vesca | FvH4_6g40280 FvH4_6g40280 |
| malus_domestica | MD09G1133200.v1.1 |
| prunus_persica | Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1 |
| pyrus_communis | pycom09g05430 pycom17g11110 |
| rosa_chinensis | RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471 |
| rosa_laevigata | RLG00000020837 RLG00000020839 |
| rosa_multiflora | Rmu_sc0006608.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130 |
| rosa_rugosa | Rorug02G0447200 |
| rosa_samantha | Rh2BG524100 Rh2CG498300 Rh2CG498400 |
| rosa_wichuraiana | Rw2G042200 Rw2G042210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 94 |
| AgsI | TTSAA | 1 cut(s) | 190 |
| AjnI | CCWGG | 1 cut(s) | 334 |
| AluBI | AGCT | 2 cut(s) | 62, 186 |
| AluI | AGCT | 2 cut(s) | 62, 186 |
| AoxI | GGCC | 1 cut(s) | 121 |
| ApeKI | GCWGC | 2 cut(s) | 109, 288 |
| ApoI | RAATTY | 1 cut(s) | 94 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 103 |
| BbsI | GAAGAC | 1 cut(s) | 74 |
| BbvI | GCAGC | 2 cut(s) | 121, 275 |
| BccI | CCATC | 2 cut(s) | 80, 137 |
| BciT130I | CCWGG | 1 cut(s) | 336 |
| BclI | TGATCA | 1 cut(s) | 18 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BisI | GCNGC | 2 cut(s) | 110, 289 |
| BlsI | GCNGC | 2 cut(s) | 111, 290 |
| Bme1390I | CCNGG | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 1 cut(s) | 336 |
| BpiI | GAAGAC | 1 cut(s) | 74 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 138, 168 |
| Bse1I | ACTGG | 1 cut(s) | 274 |
| BseBI | CCWGG | 1 cut(s) | 336 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseMII | CTCAG | 1 cut(s) | 190 |
| BseNI | ACTGG | 1 cut(s) | 274 |
| BseXI | GCAGC | 2 cut(s) | 121, 275 |
| BshFI | GGCC | 1 cut(s) | 123 |
| BsnI | GGCC | 1 cut(s) | 123 |
| Bsp143I | GATC | 1 cut(s) | 18 |
| BspANI | GGCC | 1 cut(s) | 123 |
| BspCNI | CTCAG | 1 cut(s) | 189 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 274 |
| BssMI | GATC | 1 cut(s) | 18 |
| Bst2UI | CCWGG | 1 cut(s) | 336 |
| Bst6I | CTCTTC | 1 cut(s) | 237 |
| BstC8I | GCNNGC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 1 cut(s) | 176 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 1 cut(s) | 21 |
| BstMBI | GATC | 1 cut(s) | 18 |
| BstNI | CCWGG | 1 cut(s) | 336 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| BstSCI | CCNGG | 1 cut(s) | 334 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 2 cut(s) | 121, 275 |
| BstV2I | GAAGAC | 1 cut(s) | 74 |
| BsuRI | GGCC | 1 cut(s) | 123 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| Cac8I | GCNNGC | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| CsiI | ACCWGGT | 1 cut(s) | 334 |
| CviAII | CATG | 3 cut(s) | 38, 194, 283 |
| CviJI | RGCY | 5 cut(s) | 56, 62, 123, 186, 288 |
| CviKI_1 | RGCY | 5 cut(s) | 56, 62, 123, 186, 288 |
| DdeI | CTNAG | 1 cut(s) | 176 |
| DpnI | GATC | 1 cut(s) | 20 |
| DpnII | GATC | 1 cut(s) | 18 |
| Eam1104I | CTCTTC | 1 cut(s) | 237 |
| EarI | CTCTTC | 1 cut(s) | 237 |
| EcoO109I | RGGNCCY | 1 cut(s) | 121 |
| EcoRI | GAATTC | 1 cut(s) | 94 |
| EcoRII | CCWGG | 1 cut(s) | 334 |
| FaeI | CATG | 3 cut(s) | 41, 197, 286 |
| FaiI | YATR | 6 cut(s) | 39, 65, 195, 279, 284, 350 |
| FatI | CATG | 3 cut(s) | 37, 193, 282 |
| FbaI | TGATCA | 1 cut(s) | 18 |
| Fnu4HI | GCNGC | 2 cut(s) | 110, 289 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 2 cut(s) | 110, 289 |
| GluI | GCNGC | 2 cut(s) | 110, 289 |
| HaeIII | GGCC | 1 cut(s) | 123 |
| Hin1II | CATG | 3 cut(s) | 41, 197, 286 |
| HindIII | AAGCTT | 1 cut(s) | 184 |
| HphI | GGTGA | 2 cut(s) | 28, 103 |
| Hpy166II | GTNNAC | 2 cut(s) | 214, 320 |
| Hpy188I | TCNGA | 1 cut(s) | 179 |
| Hpy188III | TCNNGA | 1 cut(s) | 51 |
| Hpy8I | GTNNAC | 2 cut(s) | 214, 320 |
| HpyAV | CCTTC | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 3 cut(s) | 37, 74, 109 |
| HpyF3I | CTNAG | 1 cut(s) | 176 |
| Hsp92II | CATG | 3 cut(s) | 41, 197, 286 |
| Ksp22I | TGATCA | 1 cut(s) | 18 |
| Kzo9I | GATC | 1 cut(s) | 18 |
| LpnPI | CCDG | 9 cut(s) | 64, 98, 123, 273, 287, 306, 321, 328, 348 |
| Lsp1109I | GCAGC | 2 cut(s) | 121, 275 |
| MabI | ACCWGGT | 1 cut(s) | 334 |
| MaeIII | GTNAC | 1 cut(s) | 133 |
| MalI | GATC | 1 cut(s) | 20 |
| MboI | GATC | 1 cut(s) | 18 |
| MboII | GAAGA | 6 cut(s) | 79, 244, 254, 259, 262, 341 |
| MluCI | AATT | 1 cut(s) | 94 |
| MnlI | CCTC | 4 cut(s) | 217, 232, 256, 321 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| MspR9I | CCNGG | 1 cut(s) | 336 |
| MvaI | CCWGG | 1 cut(s) | 336 |
| NdeII | GATC | 1 cut(s) | 18 |
| NlaIII | CATG | 3 cut(s) | 41, 197, 286 |
| NmuCI | GTSAC | 1 cut(s) | 133 |
| NspI | RCATGY | 1 cut(s) | 197 |
| PaeI | GCATGC | 1 cut(s) | 197 |
| PkrI | GCNGC | 2 cut(s) | 111, 290 |
| Psp6I | CCWGG | 1 cut(s) | 334 |
| PspGI | CCWGG | 1 cut(s) | 334 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SatI | GCNGC | 2 cut(s) | 110, 289 |
| Sau3AI | GATC | 1 cut(s) | 18 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 1 cut(s) | 336 |
| SetI | ASST | 4 cut(s) | 15, 64, 188, 337 |
| SexAI | ACCWGGT | 1 cut(s) | 334 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| SphI | GCATGC | 1 cut(s) | 197 |
| Sse9I | AATT | 1 cut(s) | 94 |
| StyD4I | CCNGG | 1 cut(s) | 334 |
| TasI | AATT | 1 cut(s) | 94 |
| TseFI | GTSAC | 1 cut(s) | 133 |
| TseI | GCWGC | 2 cut(s) | 109, 288 |
| Tsp45I | GTSAC | 1 cut(s) | 133 |
| TspDTI | ATGAA | 2 cut(s) | 17, 80 |
| XapI | RAATTY | 1 cut(s) | 94 |
| XceI | RCATGY | 1 cut(s) | 197 |