Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Reverse (-)

2424117 .. 2425022

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGCAAAAGATCCTGATAAGAATTGCTATGACTGATGACACAACTCGAGCAAAGGCAATGAAAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATTGAGGTGACCGGTGTTGAAGTCGATATGATTGCTCTAATCAACACACTCAGGAAAAAAGTTGCATTTGCGGAGCTTGTTAGCGTAGCTAAAGTTGAACCACCTAAGGATGGTGACAAAAAGCCAGAAGAAGAAAAGAAACCCGAAGAGAAGAAACCCGAAGAGAAGAAACCTGAAGAGAAGAAACCTGAGCCATGTTGTCAACCATGGCAAAAACCTGAGCCATGTTATCAACCATGGCCTCATGATGGATATGGTGTGCCATCTTCCTATCCCTACCCGTGTGATCCCTACAATCAGATCGGGGAACCCGTTTACAATCAAGATCCCAATTGCAGGATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.94

Weight (kDa)

6.74

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	71, 197
AclWI	GGATC	4 cut(s)	7, 407, 446, 473
AcuI	CTGAAG	1 cut(s)	321
AfiI	CCNNNNNNNGG	4 cut(s)	130, 236, 374, 462
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	146, 224
AluBI	AGCT	2 cut(s)	202, 215
AluI	AGCT	2 cut(s)	202, 215
AlwI	GGATC	4 cut(s)	7, 407, 446, 473
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	1 cut(s)	365
AsiGI	ACCGGT	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	145, 251
AvaI	CYCGRG	1 cut(s)	48
AxyI	CCTNAGG	1 cut(s)	231
BccI	CCATC	3 cut(s)	230, 368, 397
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BmeT110I	CYCGRG	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	122, 435
Bpu10I	CCTNAGC	2 cut(s)	315, 345
BsaJI	CCNNGG	2 cut(s)	332, 362
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 236, 374, 462
Bse118I	RCCGGY	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	332, 362
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	4 cut(s)	130, 236, 374, 462
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	190, 306, 336
BshFI	GGCC	1 cut(s)	367
BshTI	ACCGGT	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	4 cut(s)	130, 236, 374, 462
BsnI	GGCC	1 cut(s)	367
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
Bsp19I	CCATGG	2 cut(s)	332, 362
BspACI	CCGC	2 cut(s)	71, 197
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	3 cut(s)	189, 307, 337
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	122, 435
BspPI	GGATC	4 cut(s)	7, 407, 446, 473
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	332, 362
BssMI	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
BssT1I	CCWWGG	2 cut(s)	332, 362
Bst6I	CTCTTC	3 cut(s)	267, 282, 297
BstDEI	CTNAG	4 cut(s)	176, 231, 315, 345
BstDSI	CCRYGG	2 cut(s)	332, 362
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	6 cut(s)	15, 115, 415, 429, 454, 468
BstMBI	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
BstPI	GGTNACC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	12, 451
BstYI	RGATCY	2 cut(s)	12, 451
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	2 cut(s)	332, 362
BtsCI	GGATG	1 cut(s)	241
CciI	TCATGA	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	137
CspAI	ACCGGT	1 cut(s)	137
CviAII	CATG	6 cut(s)	321, 333, 351, 363, 371, 469
CviJI	RGCY	6 cut(s)	202, 215, 250, 319, 349, 367
CviKI_1	RGCY	6 cut(s)	202, 215, 250, 319, 349, 367
DdeI	CTNAG	4 cut(s)	176, 231, 315, 345
DpnI	GATC	6 cut(s)	14, 114, 414, 428, 453, 467
DpnII	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	3 cut(s)	267, 282, 297
EarI	CTCTTC	3 cut(s)	267, 282, 297
Eco130I	CCWWGG	2 cut(s)	332, 362
Eco57I	CTGAAG	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	48
Eco91I	GGTNACC	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	332, 362
ErhI	CCWWGG	2 cut(s)	332, 362
FaeI	CATG	6 cut(s)	324, 336, 354, 366, 374, 472
FaiI	YATR	9 cut(s)	32, 155, 322, 334, 352, 364, 372, 381, 470
FatI	CATG	6 cut(s)	320, 332, 350, 362, 370, 468
FokI	GGATG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	6 cut(s)	324, 336, 354, 366, 374, 472
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	145, 251
Hpy166II	GTNNAC	3 cut(s)	91, 329, 442
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	4 cut(s)	16, 178, 371, 449
Hpy8I	GTNNAC	3 cut(s)	91, 329, 442
HpyCH4V	TGCA	2 cut(s)	191, 462
HpyF3I	CTNAG	4 cut(s)	176, 231, 315, 345
Hsp92II	CATG	6 cut(s)	324, 336, 354, 366, 374, 472
Kzo9I	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
LmnI	GCTCC	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	133, 239
MalI	GATC	6 cut(s)	14, 114, 414, 428, 453, 467
MboI	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
MboII	GAAGA	9 cut(s)	266, 269, 284, 289, 299, 304, 314, 319, 384
MfeI	CAATTG	1 cut(s)	457
MflI	RGATCY	2 cut(s)	12, 451
MluCI	AATT	2 cut(s)	24, 457
MnlI	CCTC	2 cut(s)	124, 378
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	457
NcoI	CCATGG	2 cut(s)	332, 362
NdeII	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
NlaIII	CATG	6 cut(s)	324, 336, 354, 366, 374, 472
NlaIV	GGNNCC	2 cut(s)	122, 435
NmuCI	GTSAC	2 cut(s)	133, 239
PaeR7I	CTCGAG	1 cut(s)	48
PagI	TCATGA	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PinAI	ACCGGT	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	122, 435
PspXI	VCTCGAGB	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	12, 451
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	6 cut(s)	12, 112, 412, 426, 451, 465
SetI	ASST	7 cut(s)	135, 204, 217, 232, 301, 316, 346
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	24, 457
SsiI	CCGC	2 cut(s)	71, 197
StyI	CCWWGG	2 cut(s)	332, 362
TaqI	TCGA	2 cut(s)	49, 150
TasI	AATT	2 cut(s)	24, 457
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	133, 239
Tsp45I	GTSAC	2 cut(s)	133, 239
TspDTI	ATGAA	2 cut(s)	17, 77
XhoI	CTCGAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.