Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Forward (+)

69279101 .. 69279718

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGCAAAAGGTGGTGATCAGCCTCTCTGTGCACGACGAGAAGTCCCGATCCAAGGCAATGAAGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTTCCACTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACTTCTCAGAAAAAGCGTCAAGCGTGCTGACGTCGTCAGTGTGAGCGCTGTCAAAGAGGAGGAGAAGAAGAAGGAGGAGCCTAAAATTGAGCAAATCATCGTCGGATGGCCTCAGACTTACCCAGTTGCTTCATACCAGTACCAGTGCTATGAGCCAAGCCCCGGTTGCTCCATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.7

Weight (kDa)

5.84

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	308
AfeI	AGCGCT	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	55, 329
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	45
Aor51HI	AGCGCT	1 cut(s)	214
AoxI	GGCC	1 cut(s)	275
ApaLI	GTGCAC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	71, 95
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	77, 267
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	2 cut(s)	71, 95
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	54, 328
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 329
Bse1I	ACTGG	4 cut(s)	114, 290, 304, 310
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	54, 328
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	55, 329
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	187, 293
BseNI	ACTGG	4 cut(s)	114, 290, 304, 310
BseRI	GAGGAG	3 cut(s)	239, 242, 257
BseSI	GKGCMC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	55, 329
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	18, 50
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	186, 292
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	114, 290, 304, 310
BssECI	CCNNGG	2 cut(s)	54, 328
BssMI	GATC	2 cut(s)	18, 50
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	173, 279
BstF5I	GGATG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	21, 53
BstMBI	GATC	2 cut(s)	18, 50
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	71, 95
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	107, 211, 317
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	307
CviJI	RGCY	5 cut(s)	24, 247, 277, 322, 327
CviKI_1	RGCY	5 cut(s)	24, 247, 277, 322, 327
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	173, 279
DpnI	GATC	2 cut(s)	20, 52
DpnII	GATC	2 cut(s)	18, 50
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	3 cut(s)	301, 318, 344
FaqI	GGGAC	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 272, 282
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	3 cut(s)	41, 203, 272
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	2 cut(s)	173, 279
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 50
LmnI	GCTCC	2 cut(s)	244, 341
LpnPI	CCDG	6 cut(s)	95, 120, 303, 317, 323, 343
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	20, 52
MboI	GATC	2 cut(s)	18, 50
MboII	GAAGA	4 cut(s)	76, 95, 244, 247
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	123, 252
MmeI	TCCRAC	2 cut(s)	55, 250
MnlI	CCTC	5 cut(s)	35, 217, 220, 235, 288
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	18, 50
NlaIV	GGNNCC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
Sau3AI	GATC	2 cut(s)	18, 50
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	2 cut(s)	15, 201
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	2 cut(s)	123, 252
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	201
TasI	AATT	2 cut(s)	123, 252
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	3 cut(s)	114, 211, 317
TspDTI	ATGAA	3 cut(s)	17, 77, 288
TspRI	CASTG	3 cut(s)	114, 211, 317
Tth111I	GACNNNGTC	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	118
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.