Rh2CG498400

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006446
Physical Location & Seq
Forward (+)
67092433 .. 67093111
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG498400.1

Sequence Viewer

Length: 366 bp
ATGCATTGTGGGCAACATATAGCAAGCACTTCCAATTCAATTCTGGTCATTTTGATTTCTGGGTTTTCTGCCAATTCTGAAAGCTCTCTTCTGTGTTTTGATTTGCAGCAAAAGGTGGTGATCAGGCTCTCTGTGCACGACGAGAAGTCCCGATCCAAGGCAATGAAGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCCACTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACTTCTCAGAAAAAGCGTCAAGCGTGCTGACGTCGTCAGTGTGAGCCCTGTCAAAGAGGAGGAGAAGAAGAAAGAGGAGAAGAAGGAGGAGCCTAAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.32

Weight (kDa)

6.3

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
AclWI GGATC 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 39, 230
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw21I GWGCWC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 1 cut(s) 147
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 179
BclI TGATCA 1 cut(s) 120
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 220
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 3 cut(s) 341, 344, 359
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 138, 317
Bsp143I GATC 2 cut(s) 120, 152
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 120, 152
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 25, 294
BstDEI CTNAG 1 cut(s) 275
BstKTI GATC 2 cut(s) 123, 155
BstMBI GATC 2 cut(s) 120, 152
BstMWI GCNNNNNNNGC 2 cut(s) 10, 133
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 173
BtsIMutI CAGTG 2 cut(s) 209, 313
Cac8I GCNNGC 2 cut(s) 25, 294
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 274
CviJI RGCY 4 cut(s) 84, 127, 315, 361
CviKI_1 RGCY 4 cut(s) 84, 127, 315, 361
DdeI CTNAG 1 cut(s) 275
DpnI GATC 2 cut(s) 122, 154
DpnII GATC 2 cut(s) 120, 152
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 93
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 156
FaiI YATR 2 cut(s) 18, 20
FaqI GGGAC 1 cut(s) 133
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 107
HgaI GACGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 300
HinfI GANTC 1 cut(s) 194
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 79, 278
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 143, 305
HpyAV CCTTC 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 4, 106, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 133
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 2 cut(s) 120, 152
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 6 cut(s) 29, 45, 109, 197, 222, 330
Lsp1109I GCAGC 1 cut(s) 118
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 122, 154
MboI GATC 2 cut(s) 120, 152
MboII GAAGA 5 cut(s) 80, 178, 346, 349, 361
MhlI GDGCHC 2 cut(s) 138, 317
MluCI AATT 4 cut(s) 34, 39, 73, 225
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 4 cut(s) 319, 322, 337, 349
Mph1103I ATGCAT 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 10, 133
NdeII GATC 2 cut(s) 120, 152
NlaIV GGNNCC 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 194
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 302
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 120, 152
Sau96I GGNCC 1 cut(s) 220
SduI GDGCHC 2 cut(s) 138, 317
SetI ASST 3 cut(s) 86, 117, 303
SinI GGWCC 1 cut(s) 220
Sse9I AATT 4 cut(s) 34, 39, 73, 225
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 303
TasI AATT 4 cut(s) 34, 39, 73, 225
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 2 cut(s) 216, 313
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 2 cut(s) 216, 313
Tth111I GACNNNGTC 1 cut(s) 302
VneI GTGCAC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
ZraI GACGTC 1 cut(s) 301
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.