Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Forward (+)

69259256 .. 69261383

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCACCCAAAAGATTTGGACACAAATTTGCATTCATTTAATTACAAAAAGCTTCAAGAAGCTACAAATGGATTTGAGGAAGAATTGGGAAGGGGTTCCTTTGGAGTTGTTTACAAAGGGAAAATAGAAGCTGGTTCTGGTGTTGAAGTGGTAGTGATCGAAGAAGCTAAGCTTTGTGATGCAAGAACACGCCTCTTCCTAGTCCTCCCCTACCATCAATCTCCCAAAGCCAGAAGCGCCATCTTCATCTTCCATCATCAATTCTTCTTCATTATCATCATGAAGCAAAAGATGGTGATCAGGCTCTCTGTGCACGACGAGAGGTCTCGATCCAAGGCAATGAGGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCTATTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACGACTCAGAAAAAGAGTCAAGTGCGCTAATCCTATGGTCGTCAGTGTAAGCCCTGTCAAAGAGGAGGGGAAGAAGAAGGAGGAGAAGAAGGAAGAGAAGAAGGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGCCTAAAGTTGAGCAAATCATCGTCGGATGTCCTCAGACTTACCCATGCCAGTGCCTGCCGGCGCCATATATATGTACGTACCAGTGCTATGAGCCAAGCCCCAGTTGCTCCATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.34

Weight (kDa)

8.32

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	640
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	2 cut(s)	655, 659
AgsI	TTSAA	3 cut(s)	56, 146, 407
AhdI	GACNNNNNGTC	1 cut(s)	322
AluBI	AGCT	5 cut(s)	52, 62, 131, 167, 172
AluI	AGCT	5 cut(s)	52, 62, 131, 167, 172
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	330
Alw44I	GTGCAC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	324
AlwNI	CAGNNNCTG	1 cut(s)	634
ApaLI	GTGCAC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	94
AspLEI	GCGC	3 cut(s)	239, 473, 643
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	315
BccI	CCATC	5 cut(s)	222, 248, 261, 286, 356
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	240, 644
BlpI	GCTNAGC	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	97, 579, 642
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	675
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	641
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	3 cut(s)	628, 661, 681
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	611
BseJI	GATNNNNATC	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	466, 626
BseNI	ACTGG	3 cut(s)	628, 661, 681
BseRI	GAGGAG	3 cut(s)	524, 542, 590
BseSI	GKGCMC	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	640
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	156, 297, 329
Bsp1720I	GCTNAGC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	465, 625
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	97, 579, 642
BspPI	GGATC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	3 cut(s)	628, 661, 681
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	3 cut(s)	156, 297, 329
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	333
Bst6I	CTCTTC	4 cut(s)	200, 534, 546, 558
BstACI	GRCGYC	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	635, 639
BstDEI	CTNAG	3 cut(s)	168, 452, 612
BstF5I	GGATG	1 cut(s)	611
BstH2I	RGCGCY	2 cut(s)	240, 644
BstHHI	GCGC	3 cut(s)	239, 473, 643
BstKTI	GATC	3 cut(s)	159, 300, 332
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	3 cut(s)	156, 297, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 310, 684
BstSLI	GKGCMC	1 cut(s)	315
BstSNI	TACGTA	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	611
BtsIMutI	CAGTG	3 cut(s)	496, 635, 668
Cac8I	GCNNGC	2 cut(s)	635, 639
CaiI	CAGNNNCTG	1 cut(s)	634
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	3 cut(s)	239, 473, 643
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	654, 658
CviAII	CATG	2 cut(s)	280, 624
CviQI	GTAC	2 cut(s)	654, 658
DdeI	CTNAG	3 cut(s)	168, 452, 612
DinI	GGCGCC	1 cut(s)	642
DpnI	GATC	3 cut(s)	158, 299, 331
DpnII	GATC	3 cut(s)	156, 297, 329
DriI	GACNNNNNGTC	1 cut(s)	322
Eam1104I	CTCTTC	4 cut(s)	200, 534, 546, 558
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	4 cut(s)	200, 534, 546, 558
Eco105I	TACGTA	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	333
EgeI	GGCGCC	1 cut(s)	642
EheI	GGCGCC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	283, 627
FaiI	YATR	8 cut(s)	281, 482, 625, 646, 648, 650, 652, 669
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	2 cut(s)	279, 623
FbaI	TGATCA	1 cut(s)	297
FokI	GGATG	1 cut(s)	618
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	3 cut(s)	238, 472, 642
HaeII	RGCGCY	2 cut(s)	240, 644
HapII	CCGG	1 cut(s)	638
HhaI	GCGC	3 cut(s)	239, 473, 643
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	2 cut(s)	283, 627
Hin6I	GCGC	3 cut(s)	237, 471, 641
HinP1I	GCGC	3 cut(s)	237, 471, 641
HindIII	AAGCTT	2 cut(s)	50, 170
HinfI	GANTC	3 cut(s)	371, 450, 462
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	112, 313
Hpy188I	TCNGA	3 cut(s)	455, 605, 615
Hpy188III	TCNNGA	3 cut(s)	56, 280, 327
Hpy8I	GTNNAC	2 cut(s)	112, 313
Hpy99I	CGWCG	2 cut(s)	320, 605
HpyAV	CCTTC	6 cut(s)	84, 517, 529, 541, 553, 565
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	4 cut(s)	4, 31, 182, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 310, 684
HpyF3I	CTNAG	3 cut(s)	168, 452, 612
HpySE526I	ACGT	1 cut(s)	656
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	2 cut(s)	283, 627
HspAI	GCGC	3 cut(s)	237, 471, 641
KasI	GGCGCC	1 cut(s)	640
KroI	GCCGGC	1 cut(s)	637
KroNI	GCCGGC	1 cut(s)	639
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	156, 297, 329
LmnI	GCTCC	2 cut(s)	577, 692
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	3 cut(s)	158, 299, 331
MboI	GATC	3 cut(s)	156, 297, 329
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	5 cut(s)	25, 40, 83, 260, 402
Mly113I	GGCGCC	1 cut(s)	641
MlyI	GAGTC	2 cut(s)	444, 471
MmeI	TCCRAC	2 cut(s)	334, 583
MroNI	GCCGGC	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	2 cut(s)	628, 649
MspI	CCGG	1 cut(s)	638
Mva1269I	GAATGC	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	236, 310, 684
NaeI	GCCGGC	1 cut(s)	639
NarI	GGCGCC	1 cut(s)	641
NdeII	GATC	3 cut(s)	156, 297, 329
NgoMIV	GCCGGC	1 cut(s)	637
NlaIII	CATG	2 cut(s)	283, 627
NlaIV	GGNNCC	3 cut(s)	97, 579, 642
PagI	TCATGA	1 cut(s)	279
PctI	GAATGC	1 cut(s)	31
PdiI	GCCGGC	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	371
PleI	GAGTC	2 cut(s)	444, 470
PluTI	GGCGCC	1 cut(s)	644
PpsI	GAGTC	2 cut(s)	444, 470
Ppu21I	YACGTR	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	97, 579, 642
PspPI	GGNCC	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	634
RsaI	GTAC	2 cut(s)	655, 659
RsaNI	GTAC	2 cut(s)	654, 658
RseI	CAYNNNNRTG	2 cut(s)	628, 649
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	156, 297, 329
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	2 cut(s)	444, 471
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	7 cut(s)	54, 64, 133, 169, 174, 326, 659
SfaNI	GCATC	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	642
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	2 cut(s)	628, 649
SnaBI	TACGTA	1 cut(s)	657
Sse9I	AATT	5 cut(s)	25, 40, 83, 260, 402
SspDI	GGCGCC	1 cut(s)	640
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	2 cut(s)	159, 328
TasI	AATT	5 cut(s)	25, 40, 83, 260, 402
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	3 cut(s)	496, 635, 668
TspDTI	ATGAA	4 cut(s)	24, 235, 259, 296
TspRI	CASTG	3 cut(s)	496, 635, 668
VneI	GTGCAC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	94
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.