Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Reverse (-)

15056589 .. 15057794

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGCAAAAGGTGGTGATCAGGCTCTCTGTGCACGACGAGAAGTCCCGATCCAAGGCACTGAAGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCCACTGGACAAGAACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACTTCTCAGAAAAAGCGTCAAGCGTGCTGACGTCGTCAGTGTGAGCCCTGTCAAAGAGGAGGAGAAGAAGAAGGAGGAGCAAATCATCGTCGGATGGCCTCAGACTTACCCAGTTGCTTCATGCCAGTACCCGCCATATACGTACCAGTGCTATGATCAGCCAAGCCCCGGTTGCTCCATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

7.66

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	296, 311
AfiI	CCNNNNNNNGG	2 cut(s)	55, 335
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	263
ApaLI	GTGCAC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	77, 255
BclI	TGATCA	2 cut(s)	18, 322
BcnI	CCSGG	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	336
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	54, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 335
Bse1I	ACTGG	4 cut(s)	114, 278, 292, 313
BseDI	CCNNGG	2 cut(s)	54, 334
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	55, 335
BseMII	CTCAG	2 cut(s)	187, 281
BseNI	ACTGG	4 cut(s)	114, 278, 292, 313
BseRI	GAGGAG	3 cut(s)	239, 242, 257
BseSI	GKGCMC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	55, 335
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	36, 215
Bsp143I	GATC	3 cut(s)	18, 50, 322
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	2 cut(s)	186, 280
BspPI	GGATC	1 cut(s)	45
BsrI	ACTGG	4 cut(s)	114, 278, 292, 313
BssECI	CCNNGG	2 cut(s)	54, 334
BssMI	GATC	3 cut(s)	18, 50, 322
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	173, 267
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	3 cut(s)	21, 53, 325
BstMBI	GATC	3 cut(s)	18, 50, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 339
BstSCI	CCNGG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	36
BstSNI	TACGTA	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	4 cut(s)	59, 107, 211, 320
Cac8I	GCNNGC	1 cut(s)	192
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	295, 310
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	5 cut(s)	25, 213, 265, 328, 333
CviKI_1	RGCY	5 cut(s)	25, 213, 265, 328, 333
CviQI	GTAC	2 cut(s)	295, 310
DdeI	CTNAG	2 cut(s)	173, 267
DpnI	GATC	3 cut(s)	20, 52, 324
DpnII	GATC	3 cut(s)	18, 50, 322
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	291
FaiI	YATR	5 cut(s)	289, 304, 306, 321, 350
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	287
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	2 cut(s)	18, 322
FokI	GGATG	1 cut(s)	273
FriOI	GRGCYC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	291
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 260, 270
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	3 cut(s)	41, 203, 260
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	2 cut(s)	198, 308
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 339
HpyF3I	CTNAG	2 cut(s)	173, 267
HpySE526I	ACGT	2 cut(s)	198, 308
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	291
Ksp22I	TGATCA	2 cut(s)	18, 322
Kzo9I	GATC	3 cut(s)	18, 50, 322
LmnI	GCTCC	2 cut(s)	244, 347
LpnPI	CCDG	8 cut(s)	7, 95, 120, 228, 291, 305, 326, 349
MaeII	ACGT	2 cut(s)	198, 308
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	3 cut(s)	20, 52, 324
MboI	GATC	3 cut(s)	18, 50, 322
MboII	GAAGA	3 cut(s)	76, 244, 247
MhlI	GDGCHC	2 cut(s)	36, 215
MluCI	AATT	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	55, 238
MnlI	CCTC	4 cut(s)	217, 220, 235, 276
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	31, 339
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	18, 50, 322
NlaIII	CATG	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	296, 311
RsaNI	GTAC	2 cut(s)	295, 310
Sau3AI	GATC	3 cut(s)	18, 50, 322
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	36, 215
SetI	ASST	3 cut(s)	15, 201, 311
SnaBI	TACGTA	1 cut(s)	309
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	201, 311
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	4 cut(s)	66, 114, 211, 320
TspDTI	ATGAA	2 cut(s)	17, 276
TspRI	CASTG	4 cut(s)	66, 114, 211, 320
Tth111I	GACNNNGTC	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.