transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290 |
| fragaria_vesca | FvH4_6g40280 FvH4_6g40280 |
| malus_domestica | MD09G1133200.v1.1 |
| prunus_persica | Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1 |
| pyrus_communis | pycom09g05430 pycom17g11110 |
| rosa_chinensis | RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471 |
| rosa_laevigata | RLG00000020837 RLG00000020839 |
| rosa_multiflora | Rmu_sc0006608.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130 |
| rosa_rugosa | Rorug02G0447200 |
| rosa_samantha | Rh2BG524100 Rh2CG498300 Rh2CG498400 |
| rosa_wichuraiana | Rw2G042200 Rw2G042210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 121, 214 |
| AgsI | TTSAA | 1 cut(s) | 181 |
| AluBI | AGCT | 3 cut(s) | 53, 166, 177 |
| AluI | AGCT | 3 cut(s) | 53, 166, 177 |
| Alw21I | GWGCWC | 1 cut(s) | 30 |
| Alw44I | GTGCAC | 1 cut(s) | 26 |
| AlwI | GGATC | 1 cut(s) | 332 |
| ApaLI | GTGCAC | 1 cut(s) | 26 |
| ApeKI | GCWGC | 2 cut(s) | 62, 100 |
| AspLEI | GCGC | 1 cut(s) | 317 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 3 cut(s) | 22, 94, 136 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BaeGI | GKGCMC | 1 cut(s) | 30 |
| Bbv12I | GWGCWC | 1 cut(s) | 30 |
| BbvI | GCAGC | 2 cut(s) | 49, 112 |
| BccI | CCATC | 1 cut(s) | 71 |
| BclI | TGATCA | 1 cut(s) | 12 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| BisI | GCNGC | 2 cut(s) | 63, 101 |
| BlsI | GCNGC | 2 cut(s) | 64, 102 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BmrI | ACTGGG | 1 cut(s) | 336 |
| BmuI | ACTGGG | 1 cut(s) | 336 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 121, 214 |
| Bse1I | ACTGG | 2 cut(s) | 277, 342 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 121, 214 |
| BseMII | CTCAG | 2 cut(s) | 102, 181 |
| BseNI | ACTGG | 2 cut(s) | 277, 342 |
| BseRI | GAGGAG | 2 cut(s) | 288, 291 |
| BseSI | GKGCMC | 1 cut(s) | 30 |
| BseXI | GCAGC | 2 cut(s) | 49, 112 |
| BsiHKAI | GWGCWC | 1 cut(s) | 30 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 121, 214 |
| Bsp1286I | GDGCHC | 1 cut(s) | 30 |
| Bsp143I | GATC | 2 cut(s) | 12, 337 |
| BspCNI | CTCAG | 2 cut(s) | 101, 180 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BspPI | GGATC | 1 cut(s) | 332 |
| BsrI | ACTGG | 2 cut(s) | 277, 342 |
| BssMI | GATC | 2 cut(s) | 12, 337 |
| BstDEI | CTNAG | 2 cut(s) | 88, 167 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 119 |
| BstHHI | GCGC | 1 cut(s) | 317 |
| BstKTI | GATC | 2 cut(s) | 15, 340 |
| BstMBI | GATC | 2 cut(s) | 12, 337 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 59 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BstSLI | GKGCMC | 1 cut(s) | 30 |
| BstV1I | GCAGC | 2 cut(s) | 49, 112 |
| BstX2I | RGATCY | 1 cut(s) | 337 |
| BstYI | RGATCY | 1 cut(s) | 337 |
| BtsIMutI | CAGTG | 1 cut(s) | 205 |
| CfoI | GCGC | 1 cut(s) | 317 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| CviAII | CATG | 1 cut(s) | 286 |
| CviJI | RGCY | 7 cut(s) | 47, 53, 62, 166, 177, 262, 291 |
| CviKI_1 | RGCY | 7 cut(s) | 47, 53, 62, 166, 177, 262, 291 |
| DdeI | CTNAG | 2 cut(s) | 88, 167 |
| DpnI | GATC | 2 cut(s) | 14, 339 |
| DpnII | GATC | 2 cut(s) | 12, 337 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 119 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| FaeI | CATG | 1 cut(s) | 289 |
| FaiI | YATR | 4 cut(s) | 56, 186, 287, 331 |
| FatI | CATG | 1 cut(s) | 285 |
| FbaI | TGATCA | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 101 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 101 |
| GlaI | GCGC | 1 cut(s) | 316 |
| GluI | GCNGC | 2 cut(s) | 63, 101 |
| HhaI | GCGC | 1 cut(s) | 317 |
| Hin1II | CATG | 1 cut(s) | 289 |
| Hin6I | GCGC | 1 cut(s) | 315 |
| HinP1I | GCGC | 1 cut(s) | 315 |
| HindIII | AAGCTT | 1 cut(s) | 175 |
| HphI | GGTGA | 3 cut(s) | 22, 94, 136 |
| Hpy166II | GTNNAC | 4 cut(s) | 28, 85, 205, 326 |
| Hpy188I | TCNGA | 1 cut(s) | 170 |
| Hpy188III | TCNNGA | 1 cut(s) | 42 |
| Hpy8I | GTNNAC | 4 cut(s) | 28, 85, 205, 326 |
| HpyAV | CCTTC | 2 cut(s) | 52, 128 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 28, 65, 100, 188 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 2 cut(s) | 88, 167 |
| Hsp92II | CATG | 1 cut(s) | 289 |
| HspAI | GCGC | 1 cut(s) | 315 |
| Ksp22I | TGATCA | 1 cut(s) | 12 |
| Kzo9I | GATC | 2 cut(s) | 12, 337 |
| LmnI | GCTCC | 1 cut(s) | 322 |
| LpnPI | CCDG | 7 cut(s) | 55, 89, 114, 222, 276, 290, 355 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 112 |
| MaeIII | GTNAC | 1 cut(s) | 124 |
| MalI | GATC | 2 cut(s) | 14, 339 |
| MboI | GATC | 2 cut(s) | 12, 337 |
| MboII | GAAGA | 1 cut(s) | 262 |
| MflI | RGATCY | 1 cut(s) | 337 |
| MhlI | GDGCHC | 1 cut(s) | 30 |
| MluCI | AATT | 1 cut(s) | 225 |
| MnlI | CCTC | 8 cut(s) | 115, 184, 208, 223, 259, 306, 309, 312 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 59 |
| NdeII | GATC | 2 cut(s) | 12, 337 |
| NlaIII | CATG | 1 cut(s) | 289 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| PkrI | GCNGC | 2 cut(s) | 64, 102 |
| PpuMI | RGGWCCY | 1 cut(s) | 112 |
| Psp5II | RGGWCCY | 1 cut(s) | 112 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| PspPPI | RGGWCCY | 1 cut(s) | 112 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 337 |
| SatI | GCNGC | 2 cut(s) | 63, 101 |
| Sau3AI | GATC | 2 cut(s) | 12, 337 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 30 |
| SetI | ASST | 8 cut(s) | 9, 55, 117, 126, 139, 168, 179, 195 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SinI | GGWCC | 1 cut(s) | 112 |
| Sse9I | AATT | 1 cut(s) | 225 |
| TasI | AATT | 1 cut(s) | 225 |
| TscAI | CASTG | 1 cut(s) | 205 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 2 cut(s) | 62, 100 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspDTI | ATGAA | 1 cut(s) | 71 |
| TspRI | CASTG | 1 cut(s) | 205 |
| VneI | GTGCAC | 1 cut(s) | 26 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 119 |