Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006446

Physical Location & Seq

Genomic Coordinates Forward (+)

31792208 .. 31793183

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40280.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGCAAAAGGTGGTGATCAAGCTCTCTGTGCACGACGAGAAGTCTCGTTCCAAGGCAATGAAGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCCAATGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTTACAACTCTTCTCAGAAAAACAGTTAAGCATGCTGAGGTCGTCAGTGTGGGCGCTGTCAAAGAGGAGGAGAAGAAGAAGGAGGAGCCTAAAGCATCTGGGCCAATCATCGTCGGATGGCCTGAGAATTATGCATGGCCTCAGAATTATTACCCAGTTGCTTCATACCAGTGCCCCCCGCCAAATCCCTACCAGTGCTCTGAGCCCAGTTGCTCCATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

6.11

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07600 AT3G07600 AT5G48290 AT5G48290 AT5G48290
fragaria_vesca	FvH4_6g40280 FvH4_6g40280
malus_domestica	MD09G1133200.v1.1
prunus_persica	Prupe.3G193500_v2.0.a1 Prupe.3G193600_v2.0.a1
pyrus_communis	pycom09g05430 pycom17g11110
rosa_chinensis	RchiOBHm_Chr2g0155451 RchiOBHm_Chr2g0155471
rosa_laevigata	RLG00000020837 RLG00000020839
rosa_multiflora	Rmu_sc0006608.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093680 Rroxscaffold_2G00093740 Rroxscaffold_5G00333130
rosa_rugosa	Rorug02G0447200
rosa_samantha	Rh2BG524100 Rh2CG498300 Rh2CG498400
rosa_wichuraiana	Rw2G042200 Rw2G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	2 cut(s)	36, 359
Alw26I	GTCTC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	32
AoxI	GGCC	3 cut(s)	260, 278, 296
ApaLI	GTGCAC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	118, 260
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	36, 335
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	36, 359
BbvCI	CCTCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	77, 270
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	118, 260
BmiI	GGNNCC	1 cut(s)	246
BmrI	ACTGGG	2 cut(s)	308, 360
BmsI	GCATC	1 cut(s)	263
BmuI	ACTGGG	2 cut(s)	308, 360
BpiI	GAAGAC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	4 cut(s)	314, 328, 352, 366
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	5 cut(s)	186, 187, 273, 314, 351
BseNI	ACTGG	4 cut(s)	314, 328, 352, 366
BseRI	GAGGAG	3 cut(s)	239, 242, 257
BseSI	GKGCMC	2 cut(s)	36, 335
BshFI	GGCC	3 cut(s)	262, 280, 298
BsiHKAI	GWGCWC	2 cut(s)	36, 359
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	262, 280, 298
Bsp1286I	GDGCHC	4 cut(s)	36, 335, 359, 366
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	3 cut(s)	262, 280, 298
BspCNI	CTCAG	5 cut(s)	186, 187, 274, 313, 352
BspLI	GGNNCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	4 cut(s)	314, 328, 352, 366
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	5 cut(s)	173, 195, 282, 300, 360
BstF5I	GGATG	1 cut(s)	281
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	194
BstSLI	GKGCMC	2 cut(s)	36, 335
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	262, 280, 298
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	3 cut(s)	211, 335, 359
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	118, 260
CviAII	CATG	2 cut(s)	191, 294
CviJI	RGCY	6 cut(s)	25, 247, 262, 280, 298, 364
CviKI_1	RGCY	6 cut(s)	25, 247, 262, 280, 298, 364
DdeI	CTNAG	5 cut(s)	173, 195, 282, 300, 360
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	174
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	194, 297
FaiI	YATR	5 cut(s)	192, 291, 295, 325, 377
FatI	CATG	2 cut(s)	190, 293
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	366
GlaI	GCGC	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	262, 280, 298
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	194, 297
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	176, 275, 303, 361
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	41, 275
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	34, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	5 cut(s)	173, 195, 282, 300, 360
Hsp92II	CATG	2 cut(s)	194, 297
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	244, 377
LpnPI	CCDG	7 cut(s)	120, 243, 294, 327, 341, 365, 379
LweI	GCATC	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	4 cut(s)	76, 161, 244, 247
MhlI	GDGCHC	4 cut(s)	36, 335, 359, 366
MluCI	AATT	3 cut(s)	123, 286, 304
MmeI	TCCRAC	2 cut(s)	55, 253
MnlI	CCTC	5 cut(s)	190, 217, 220, 235, 309
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	194, 297
NlaIV	GGNNCC	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	295
NspI	RCATGY	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	118, 260
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	118, 260
SduI	GDGCHC	4 cut(s)	36, 335, 359, 366
SetI	ASST	3 cut(s)	15, 27, 201
SfaNI	GCATC	1 cut(s)	263
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	328
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	123, 286, 304
SsiI	CCGC	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	3 cut(s)	123, 286, 304
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	3 cut(s)	211, 335, 359
TspDTI	ATGAA	3 cut(s)	17, 77, 312
TspRI	CASTG	3 cut(s)	211, 335, 359
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	118
XceI	RCATGY	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.