Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007593

Physical Location & Seq

Genomic Coordinates Forward (+)

67106208 .. 67110266

Gene Structure 4059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG498500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAGGCTACCAATACCTGGCCTTTGCCTCCTCTCTTTTCTTCTCTCTTCTCTATTACTCCACAGACCCACCTTTGCTATCAAAAAGTCATATGTGGTGTACTTTGGAGCTCACTCACACCCTCCAAACTTTTCAGAACTTGAACTAACCGGAGTGAGAAAGAATCACTGTGAGTTTCTTGGATCATTCTTGGGCAGCCATGAAGTTGCAAAAGACTCCATCTTTTACTCATACACAAGGCACATCAATGGCTTTGCTGCCACATTAGAAGAAGAAGATGCAGCTCAGATAGCTAAGCATCCAAAGGTAATCTCAGTTTTCTTGAACAAGGGAAGAAAGTTACACACAACTAGATCATGGGATTTCTTGGGACTTGAGCATAATGGTGTTACTCCCCCAAATTCAATTTGGGAGAAGGCAAGATATGGTGAAGATACAATTATAGCAAACCTTGATACTGGGGCATGGCCAGAATCCAAGAGCTTTAGTGATGAAGGGTATGGACCGATTCCATCTAAGTGGAAAGGAATCTGCCAAAATGAGGCAGATTCTGAATTTCACTGCAACAGTAACTCTTATGATTTTGTTCTGCAGGGACAAAGCTTATCAGCTGTGGCCTTGCCAAGCAAGAGGTTCTATCCACTTACAAGTGCTGCAGATGCTAAAGCAGCTAATACATCTGTTCAAGAAGCTCTGCTGTGCAAGGCTGGAACGCTTGATCCAGAAAAGGTTAAGGGAAAGATATTGGCCTGCCTTCGAGGGGACAATGCAAGAGTGGACAAGGGTGAACAAGCCTTACTTGCTGGTGCTGTGGGGATGATTCTTGCTAACAGTGAAGTTAACGGGAATGAAATTATCTCCGATCCACATGTCCTCCCTGCTTCACATATCAATTTCACCGATGGCTCCCTTGTCTTTGCTTACATCAATTCAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0016787 GO:0017171 GO:0019538 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0043170 GO:0044238 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

313

Amino Acids

34.21

Weight (kDa)

6.46

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	30 - 115	2.4e-16	Peptidase inhibitor I9
MORF_dom	PF21864	56 - 107	8.5e-06	Multiple organellar RNA editing factor 1, MORF domain
PA	PF02225	230 - 303	6.2e-12	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04160
fragaria_vesca	FvH4_6g40300
malus_domestica	MD09G1132200.v1.1 MD09G1132600.v1.1 MD17G1120300.v1.1
prunus_persica	Prupe.3G147300_v2.0.a1 Prupe.3G193800_v2.0.a1
pyrus_communis	pycom09g05410 pycom17g11090
rosa_chinensis	RchiOBHm_Chr2g0155491
rosa_laevigata	RLG00000020840
rosa_multiflora	Rmu_sc0003439.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093670
rosa_rugosa	Rorug02G0447200 Rorug02G0447200
rosa_samantha	Rh2AG513600 Rh2AG513700 Rh2BG524400 Rh2BG524500 Rh2BG524600 Rh2CG498500 Rh2CG498600 Rh2DG533600
rosa_wichuraiana	Rw2G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	17
AclWI	GGATC	3 cut(s)	190, 713, 857
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	400, 554
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	17, 541, 760
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	5 cut(s)	143, 325, 405, 686, 933
AjnI	CCWGG	1 cut(s)	16
AloI	GAACNNNNNNTCC	2 cut(s)	703, 735
AluBI	AGCT	8 cut(s)	110, 284, 293, 483, 603, 611, 671, 692
AluI	AGCT	8 cut(s)	110, 284, 293, 483, 603, 611, 671, 692
Alw21I	GWGCWC	1 cut(s)	112
AlwI	GGATC	3 cut(s)	190, 713, 857
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	4 cut(s)	19, 467, 615, 747
ApeKI	GCWGC	5 cut(s)	195, 257, 281, 653, 668
ApoI	RAATTY	2 cut(s)	400, 554
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	440, 797, 889
AvaII	GGWCC	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	5 cut(s)	207, 244, 293, 640, 680
BccI	CCATC	3 cut(s)	227, 520, 896
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	2 cut(s)	590, 654
BisI	GCNGC	5 cut(s)	196, 258, 282, 654, 669
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	5 cut(s)	197, 259, 283, 655, 670
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	3 cut(s)	268, 307, 649
BmuI	ACTGGG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 541, 760
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	298, 822
BseLI	CCNNNNNNNGG	3 cut(s)	17, 541, 760
BseMII	CTCAG	2 cut(s)	299, 327
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	207, 244, 293, 640, 680
BshFI	GGCC	4 cut(s)	21, 469, 617, 749
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	3 cut(s)	384, 609, 776
BslI	CCNNNNNNNGG	3 cut(s)	17, 541, 760
BsmFI	GGGAC	3 cut(s)	384, 609, 776
BsnI	GGCC	4 cut(s)	21, 469, 617, 749
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	182, 353, 718, 862
Bsp1720I	GCTNAGC	1 cut(s)	294
BspANI	GGCC	4 cut(s)	21, 469, 617, 749
BspCNI	CTCAG	2 cut(s)	298, 326
BspLI	GGNNCC	1 cut(s)	907
BspMAI	CTGCAG	2 cut(s)	594, 658
BspPI	GGATC	3 cut(s)	190, 713, 857
BsrI	ACTGG	1 cut(s)	463
BssMI	GATC	4 cut(s)	182, 353, 718, 862
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	170, 569, 833
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	751
BstDEI	CTNAG	4 cut(s)	285, 294, 313, 516
BstF5I	GGATG	2 cut(s)	298, 822
BstKTI	GATC	4 cut(s)	185, 356, 721, 865
BstMBI	GATC	4 cut(s)	182, 353, 718, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 659, 668, 800
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	2 cut(s)	590, 654
BstV1I	GCAGC	5 cut(s)	207, 244, 293, 640, 680
BstXI	CCANNNNNNTGG	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	21, 469, 617, 749
BtsCI	GGATG	2 cut(s)	298, 822
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	3 cut(s)	166, 559, 838
Cac8I	GCNNGC	1 cut(s)	751
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	4 cut(s)	200, 357, 465, 869
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	4 cut(s)	285, 294, 313, 516
DpnI	GATC	4 cut(s)	184, 355, 720, 864
DpnII	GATC	4 cut(s)	182, 353, 718, 862
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	503
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	4 cut(s)	203, 360, 468, 872
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	3 cut(s)	384, 609, 776
FatI	CATG	4 cut(s)	199, 356, 464, 868
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	196, 258, 282, 654, 669
FokI	GGATG	2 cut(s)	285, 829
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	5 cut(s)	196, 258, 282, 654, 669
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	5 cut(s)	196, 258, 282, 654, 669
HaeIII	GGCC	4 cut(s)	21, 469, 617, 749
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	4 cut(s)	203, 360, 468, 872
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	7 cut(s)	163, 215, 473, 508, 528, 548, 820
HpaI	GTTAAC	1 cut(s)	841
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	3 cut(s)	440, 797, 889
Hpy166II	GTNNAC	4 cut(s)	100, 778, 788, 841
Hpy188I	TCNGA	4 cut(s)	136, 288, 553, 862
Hpy188III	TCNNGA	3 cut(s)	322, 686, 722
Hpy8I	GTNNAC	4 cut(s)	100, 778, 788, 841
HpyAV	CCTTC	3 cut(s)	409, 488, 764
HpyCH4III	ACNGT	3 cut(s)	170, 569, 833
HpyCH4V	TGCA	7 cut(s)	209, 281, 564, 592, 656, 702, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 659, 668, 800
HpyF3I	CTNAG	4 cut(s)	285, 294, 313, 516
Hsp92II	CATG	4 cut(s)	203, 360, 468, 872
KspAI	GTTAAC	1 cut(s)	841
Kzo9I	GATC	4 cut(s)	182, 353, 718, 862
LmnI	GCTCC	2 cut(s)	107, 911
Lsp1109I	GCAGC	5 cut(s)	207, 244, 293, 640, 680
LweI	GCATC	3 cut(s)	268, 307, 649
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	339, 388, 569
MalI	GATC	4 cut(s)	184, 355, 720, 864
MboI	GATC	4 cut(s)	182, 353, 718, 862
MboII	GAAGA	7 cut(s)	32, 39, 281, 284, 287, 345, 443
MhlI	GDGCHC	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	469
MluCI	AATT	7 cut(s)	400, 405, 438, 554, 852, 892, 928
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	38, 41, 132, 535, 624, 752, 884
Mox20I	TGGCCA	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	2 cut(s)	732, 840
MslI	CAYNNNNRTG	3 cut(s)	246, 384, 517
Msp20I	TGGCCA	1 cut(s)	469
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	290, 659, 668, 800
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	4 cut(s)	182, 353, 718, 862
NlaIII	CATG	4 cut(s)	203, 360, 468, 872
NlaIV	GGNNCC	1 cut(s)	907
NspI	RCATGY	1 cut(s)	872
PciI	ACATGT	1 cut(s)	868
PfeI	GAWTC	6 cut(s)	163, 473, 508, 528, 548, 820
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	197, 259, 283, 655, 670
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PscI	ACATGT	1 cut(s)	868
Psp124BI	GAGCTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	1 cut(s)	503
PsrI	GAACNNNNNNTAC	2 cut(s)	780, 812
PstI	CTGCAG	2 cut(s)	594, 658
PstNI	CAGNNNCTG	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	3 cut(s)	246, 384, 517
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	732, 840
SatI	GCNGC	5 cut(s)	196, 258, 282, 654, 669
Sau3AI	GATC	4 cut(s)	182, 353, 718, 862
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	3 cut(s)	268, 307, 649
SfcI	CTRYAG	2 cut(s)	590, 654
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	3 cut(s)	246, 384, 517
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	7 cut(s)	400, 405, 438, 554, 852, 892, 928
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	3 cut(s)	170, 569, 833
TaqI	TCGA	1 cut(s)	757
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	7 cut(s)	400, 405, 438, 554, 852, 892, 928
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	6 cut(s)	163, 473, 508, 528, 548, 820
Tru1I	TTAA	2 cut(s)	732, 840
Tru9I	TTAA	2 cut(s)	732, 840
TscAI	CASTG	3 cut(s)	173, 566, 838
TseI	GCWGC	5 cut(s)	195, 257, 281, 653, 668
TspDTI	ATGAA	3 cut(s)	216, 507, 864
TspRI	CASTG	3 cut(s)	173, 566, 838
Van91I	CCANNNNNTGG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	2 cut(s)	400, 554
XceI	RCATGY	1 cut(s)	872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	405
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.