Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007593

Physical Location & Seq

Genomic Coordinates Reverse (-)

8627053 .. 8627800

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCAAAAAGTCTCAATGTTATTAGTAATGAAGCTAATTGGAGCAAGATACTTCAACAAGGGCTTTGCTGCAGTTGCTGGCCCCCTCAACTCCTCCTTCAATTCGCCGCGCGACAACGATGGCCATGGTTCCCATACCTTGTCAACAGCTGGTGGAAATTTCGTAACCGGTGCAAGCGTGTTCGGCTTTGGTAATGGAACAGCAAAGGGTGGATCACCAAAATCCAGGGTTGCAGCCTATAAGGTCTGCTGGCCTCCAGTGGGAGGAGGTGGGTGCTTTGATGCAGATATATTGGCTGCATTTGATGTGGCCATCGATGACGGCGTTGATGTGTTGTCCGTTTCATTGGGTGGAGATCCCACCACATTCTTCAATGACAGTGTTTCAATTGGTGCTTTCCATGCTGTTAAGCGTGGCATTGTGGTGGTTTGCTCGGCGGGGAATTCGGGTCCAGCTGAAGGTACTGTCTCCAATATATCGCCATGGCAGATCACGGTCGGCGCCAGTACAATGGATAGGGAGTTTCCTAGTTATGTCACCCTTGGAAACTGGAAGCACTTGAAGGTTAGTTATAGTCCCTTTTTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0016787 GO:0017171 GO:0019538 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0043170 GO:0044238 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

197

Amino Acids

20.32

Weight (kDa)

8.46

Isoelectric Point (pI)

23.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04160
fragaria_vesca	FvH4_6g40300
malus_domestica	MD09G1132200.v1.1 MD09G1132600.v1.1 MD17G1120300.v1.1
prunus_persica	Prupe.3G147300_v2.0.a1 Prupe.3G193800_v2.0.a1
pyrus_communis	pycom09g05410 pycom17g11090
rosa_chinensis	RchiOBHm_Chr2g0155491
rosa_laevigata	RLG00000020840
rosa_multiflora	Rmu_sc0003439.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093670
rosa_rugosa	Rorug02G0447200 Rorug02G0447200
rosa_samantha	Rh2AG513600 Rh2AG513700 Rh2BG524400 Rh2BG524500 Rh2BG524600 Rh2CG498500 Rh2CG498600 Rh2DG533600
rosa_wichuraiana	Rw2G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccII	CGCG	2 cut(s)	109, 111
AciI	CCGC	3 cut(s)	107, 437, 586
AclWI	GGATC	2 cut(s)	220, 350
AcoI	YGGCCR	2 cut(s)	121, 309
AcsI	RAATTY	2 cut(s)	157, 442
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	2 cut(s)	463, 508
AfiI	CCNNNNNNNGG	3 cut(s)	260, 263, 458
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	5 cut(s)	55, 100, 373, 387, 562
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	34, 149, 455
AluI	AGCT	3 cut(s)	34, 149, 455
Alw26I	GTCTC	2 cut(s)	16, 472
AlwI	GGATC	2 cut(s)	220, 350
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	4 cut(s)	79, 121, 251, 309
ApeKI	GCWGC	3 cut(s)	68, 233, 296
ApoI	RAATTY	2 cut(s)	157, 442
AsiGI	ACCGGT	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	111, 503
AspS9I	GGNCC	2 cut(s)	80, 449
AsuHPI	GGTGA	2 cut(s)	207, 529
AvaII	GGWCC	1 cut(s)	449
BalI	TGGCCA	2 cut(s)	123, 311
BanI	GGYRCC	1 cut(s)	500
BbvI	GCAGC	3 cut(s)	55, 245, 283
BccI	CCATC	2 cut(s)	113, 320
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	16, 472
BfaI	CTAG	2 cut(s)	528, 589
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	504
BisI	GCNGC	4 cut(s)	69, 107, 234, 297
BlsI	GCNGC	4 cut(s)	70, 108, 235, 298
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	80, 449
BmiI	GGNNCC	4 cut(s)	82, 130, 450, 502
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	124, 225, 482, 541
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 263, 458
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	3 cut(s)	257, 504, 554
BseBI	CCWGG	1 cut(s)	226
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	4 cut(s)	124, 225, 482, 541
BseLI	CCNNNNNNNGG	3 cut(s)	260, 263, 458
BseNI	ACTGG	3 cut(s)	257, 504, 554
BseRI	GAGGAG	2 cut(s)	82, 279
BseXI	GCAGC	3 cut(s)	55, 245, 283
Bsh1236I	CGCG	2 cut(s)	109, 111
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	4 cut(s)	81, 123, 253, 311
BshNI	GGYRCC	1 cut(s)	500
BshTI	ACCGGT	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	3 cut(s)	260, 263, 458
BsmAI	GTCTC	2 cut(s)	16, 472
BsmFI	GGGAC	1 cut(s)	561
BsnI	GGCC	4 cut(s)	81, 123, 253, 311
Bsp143I	GATC	3 cut(s)	212, 355, 489
Bsp19I	CCATGG	2 cut(s)	124, 482
BspACI	CCGC	3 cut(s)	107, 437, 586
BspANI	GGCC	4 cut(s)	81, 123, 253, 311
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	2 cut(s)	109, 111
BspLI	GGNNCC	4 cut(s)	82, 130, 450, 502
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	2 cut(s)	220, 350
BspT107I	GGYRCC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	257, 504, 554
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	4 cut(s)	124, 225, 482, 541
BssMI	GATC	3 cut(s)	212, 355, 489
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	3 cut(s)	124, 482, 541
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	380, 466, 496
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	79, 175, 251
BstDSI	CCRYGG	2 cut(s)	124, 482
BstFNI	CGCG	2 cut(s)	109, 111
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	2 cut(s)	111, 503
BstKTI	GATC	3 cut(s)	215, 358, 492
BstMAI	GTCTC	2 cut(s)	16, 472
BstMBI	GATC	3 cut(s)	212, 355, 489
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 183, 401
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	69
BstUI	CGCG	2 cut(s)	109, 111
BstV1I	GCAGC	3 cut(s)	55, 245, 283
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	4 cut(s)	81, 123, 253, 311
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	2 cut(s)	124, 482
BtsIMutI	CAGTG	2 cut(s)	264, 385
Cac8I	GCNNGC	3 cut(s)	79, 175, 251
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	2 cut(s)	111, 503
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	80, 449
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	462, 507
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	3 cut(s)	125, 401, 483
CviQI	GTAC	2 cut(s)	462, 507
DinI	GGCGCC	1 cut(s)	502
DpnI	GATC	3 cut(s)	214, 357, 491
DpnII	GATC	3 cut(s)	212, 355, 489
EaeI	YGGCCR	2 cut(s)	121, 309
Eco130I	CCWWGG	3 cut(s)	124, 482, 541
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	3 cut(s)	124, 482, 541
EgeI	GGCGCC	1 cut(s)	502
EheI	GGCGCC	1 cut(s)	502
ErhI	CCWWGG	3 cut(s)	124, 482, 541
FaeI	CATG	3 cut(s)	128, 404, 486
FaiI	YATR	9 cut(s)	126, 135, 240, 290, 402, 476, 484, 534, 573
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	3 cut(s)	124, 400, 482
FauI	CCCGC	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	69, 107, 234, 297
Fsp4HI	GCNGC	4 cut(s)	69, 107, 234, 297
FspBI	CTAG	2 cut(s)	528, 589
GlaI	GCGC	2 cut(s)	110, 502
GluI	GCNGC	4 cut(s)	69, 107, 234, 297
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	4 cut(s)	81, 123, 253, 311
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	2 cut(s)	111, 503
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	3 cut(s)	128, 404, 486
Hin6I	GCGC	2 cut(s)	109, 501
HinP1I	GCGC	2 cut(s)	109, 501
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	207, 529
Hpy166II	GTNNAC	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	106, 452, 556
HpyCH4III	ACNGT	3 cut(s)	380, 466, 496
HpyCH4V	TGCA	6 cut(s)	4, 71, 173, 233, 284, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 183, 401
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	128, 404, 486
HspAI	GCGC	2 cut(s)	109, 501
KasI	GGCGCC	1 cut(s)	500
Kzo9I	GATC	3 cut(s)	212, 355, 489
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	3 cut(s)	55, 245, 283
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	528, 589
MaeIII	GTNAC	2 cut(s)	163, 535
MalI	GATC	3 cut(s)	214, 357, 491
MboI	GATC	3 cut(s)	212, 355, 489
MboII	GAAGA	1 cut(s)	361
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	355
MlsI	TGGCCA	2 cut(s)	123, 311
MluCI	AATT	5 cut(s)	36, 100, 157, 387, 442
MluNI	TGGCCA	2 cut(s)	123, 311
Mly113I	GGCGCC	1 cut(s)	501
MnlI	CCTC	5 cut(s)	95, 103, 257, 260, 264
Mox20I	TGGCCA	2 cut(s)	123, 311
MscI	TGGCCA	2 cut(s)	123, 311
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	2 cut(s)	123, 311
MspA1I	CMGCKG	2 cut(s)	149, 455
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	2 cut(s)	109, 111
MwoI	GCNNNNNNNGC	3 cut(s)	74, 183, 401
NarI	GGCGCC	1 cut(s)	501
NcoI	CCATGG	2 cut(s)	124, 482
NdeII	GATC	3 cut(s)	212, 355, 489
NlaIII	CATG	3 cut(s)	128, 404, 486
NlaIV	GGNNCC	4 cut(s)	82, 130, 450, 502
NmeAIII	GCCGAG	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	70, 108, 235, 298
PluTI	GGCGCC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	82, 130, 450, 502
PspPI	GGNCC	2 cut(s)	80, 449
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	2 cut(s)	149, 455
RsaI	GTAC	2 cut(s)	463, 508
RsaNI	GTAC	2 cut(s)	462, 507
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	4 cut(s)	69, 107, 234, 297
Sau3AI	GATC	3 cut(s)	212, 355, 489
Sau96I	GGNCC	2 cut(s)	80, 449
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	8 cut(s)	36, 140, 151, 246, 271, 457, 463, 567
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	502
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	5 cut(s)	36, 100, 157, 387, 442
SsiI	CCGC	3 cut(s)	107, 437, 586
SspDI	GGCGCC	1 cut(s)	500
SspMI	CTAG	2 cut(s)	528, 589
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	3 cut(s)	124, 482, 541
TaaI	ACNGT	3 cut(s)	380, 466, 496
TaqI	TCGA	1 cut(s)	315
TasI	AATT	5 cut(s)	36, 100, 157, 387, 442
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	2 cut(s)	264, 385
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	3 cut(s)	68, 233, 296
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	44, 333
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	2 cut(s)	264, 385
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	2 cut(s)	157, 442
XspI	CTAG	2 cut(s)	528, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.