Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007593

Physical Location & Seq

Genomic Coordinates Forward (+)

74137384 .. 74140260

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG513600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGGCTACCAATACCTGGCCTTTGCCTCCTCTCTTTTCTTCTCTCTTCTCTATTACTCCACAGACCCACCTTTGCTATCAAAAAGTCATATGTGGTGTACTTTGGAGCTCACTCACACCCTCCAAACTTTTCAGAACTTGAACTAACCGGAGTGAGAAAGAATCACTGTGAGTTTCTTGGATCATTCTTGGGCAGCCATGAAGTTGCAAAAGACTCCATCTTTTACTCATACACAAGGCACATCAATGGCTTTGCTGCCACATTAGAAGAAGAAGATGCAGCTCAGATAGCTAAGCATCCAAAGGTAATCTCAGTTTTCTTGAACAAGGGAAGAAAGTTACACACAACTAGATCATGGGATTTCTTGGGACTTGAGCATAATGGTGTTACTCCCCCAAATTCAATTTGGGAGAAGGCAAGATATGGTGAAGATACAATTATAGCAAACCTTGATACTGGGGCATGGCCAGAATCCAAGAGCTTTAGTGATGAAGGGTATGGACCGATTCCATCTAAGTGGAAAGGAATCTGCCAAAATGAGGCAGATTCTGAATTTCACTGCAACAGGTACCCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0016787 GO:0017171 GO:0019538 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0043170 GO:0044238 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

193

Amino Acids

21.78

Weight (kDa)

7.15

Isoelectric Point (pI)

23.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	30 - 115	8.5e-17	Peptidase inhibitor I9
MORF_dom	PF21864	56 - 107	3.5e-06	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04160
fragaria_vesca	FvH4_6g40300
malus_domestica	MD09G1132200.v1.1 MD09G1132600.v1.1 MD17G1120300.v1.1
prunus_persica	Prupe.3G147300_v2.0.a1 Prupe.3G193800_v2.0.a1
pyrus_communis	pycom09g05410 pycom17g11090
rosa_chinensis	RchiOBHm_Chr2g0155491
rosa_laevigata	RLG00000020840
rosa_multiflora	Rmu_sc0003439.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093670
rosa_rugosa	Rorug02G0447200 Rorug02G0447200
rosa_samantha	Rh2AG513600 Rh2AG513700 Rh2BG524400 Rh2BG524500 Rh2BG524600 Rh2CG498500 Rh2CG498600 Rh2DG533600
rosa_wichuraiana	Rw2G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	570
AccB1I	GGYRCC	1 cut(s)	570
AccB7I	CCANNNNNTGG	1 cut(s)	17
AclWI	GGATC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	400, 554
AfaI	GTAC	2 cut(s)	101, 572
AfiI	CCNNNNNNNGG	2 cut(s)	17, 541
AgsI	TTSAA	3 cut(s)	143, 325, 405
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	4 cut(s)	110, 284, 293, 483
AluI	AGCT	4 cut(s)	110, 284, 293, 483
Alw21I	GWGCWC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	19, 467
ApeKI	GCWGC	3 cut(s)	195, 257, 281
ApoI	RAATTY	2 cut(s)	400, 554
Asp718I	GGTACC	1 cut(s)	570
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	207, 244, 293
BccI	CCATC	2 cut(s)	227, 520
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	351
BisI	GCNGC	3 cut(s)	196, 258, 282
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	3 cut(s)	197, 259, 283
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	268, 307
BmuI	ACTGGG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 541
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	17, 541
BseMII	CTCAG	2 cut(s)	299, 327
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	207, 244, 293
BshFI	GGCC	2 cut(s)	21, 469
BshNI	GGYRCC	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	17, 541
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	21, 469
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	182, 353
Bsp1720I	GCTNAGC	1 cut(s)	294
BspANI	GGCC	2 cut(s)	21, 469
BspCNI	CTCAG	2 cut(s)	298, 326
BspLI	GGNNCC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	463
BssMI	GATC	2 cut(s)	182, 353
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	52
BstDEI	CTNAG	4 cut(s)	285, 294, 313, 516
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	185, 356
BstMBI	GATC	2 cut(s)	182, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	207, 244, 293
BstXI	CCANNNNNNTGG	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	21, 469
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	166, 559
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	100, 571
CviAII	CATG	3 cut(s)	200, 357, 465
CviJI	RGCY	9 cut(s)	7, 21, 110, 198, 252, 284, 293, 469, 483
CviKI_1	RGCY	9 cut(s)	7, 21, 110, 198, 252, 284, 293, 469, 483
CviQI	GTAC	2 cut(s)	100, 571
DdeI	CTNAG	4 cut(s)	285, 294, 313, 516
DpnI	GATC	2 cut(s)	184, 355
DpnII	GATC	2 cut(s)	182, 353
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	503
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	3 cut(s)	203, 360, 468
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	3 cut(s)	199, 356, 464
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	196, 258, 282
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	3 cut(s)	196, 258, 282
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	3 cut(s)	196, 258, 282
HaeIII	GGCC	2 cut(s)	21, 469
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	3 cut(s)	203, 360, 468
HinfI	GANTC	6 cut(s)	163, 215, 473, 508, 528, 548
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	136, 288, 553
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	409, 488
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	3 cut(s)	209, 281, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	4 cut(s)	285, 294, 313, 516
Hsp92II	CATG	3 cut(s)	203, 360, 468
KpnI	GGTACC	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	182, 353
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	3, 30, 163, 444, 483, 553
Lsp1109I	GCAGC	3 cut(s)	207, 244, 293
LweI	GCATC	2 cut(s)	268, 307
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	339, 388
MalI	GATC	2 cut(s)	184, 355
MboI	GATC	2 cut(s)	182, 353
MboII	GAAGA	7 cut(s)	32, 39, 281, 284, 287, 345, 443
MhlI	GDGCHC	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	469
MluCI	AATT	4 cut(s)	400, 405, 438, 554
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	38, 41, 132, 535
Mox20I	TGGCCA	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	469
MslI	CAYNNNNRTG	3 cut(s)	246, 384, 517
Msp20I	TGGCCA	1 cut(s)	469
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	182, 353
NlaIII	CATG	3 cut(s)	203, 360, 468
NlaIV	GGNNCC	1 cut(s)	572
PfeI	GAWTC	5 cut(s)	163, 473, 508, 528, 548
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	197, 259, 283
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	503
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	101, 572
RsaNI	GTAC	2 cut(s)	100, 571
RseI	CAYNNNNRTG	3 cut(s)	246, 384, 517
SacI	GAGCTC	1 cut(s)	112
SatI	GCNGC	3 cut(s)	196, 258, 282
Sau3AI	GATC	2 cut(s)	182, 353
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	9 cut(s)	19, 74, 112, 286, 295, 309, 453, 485, 572
SfaNI	GCATC	2 cut(s)	268, 307
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	3 cut(s)	246, 384, 517
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	400, 405, 438, 554
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	4 cut(s)	400, 405, 438, 554
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	5 cut(s)	163, 473, 508, 528, 548
TscAI	CASTG	2 cut(s)	173, 566
TseI	GCWGC	3 cut(s)	195, 257, 281
TspDTI	ATGAA	2 cut(s)	216, 507
TspRI	CASTG	2 cut(s)	173, 566
Van91I	CCANNNNNTGG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	2 cut(s)	400, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	405
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.