subtilisin-like protease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G04160 |
| fragaria_vesca | FvH4_6g40300 |
| malus_domestica | MD09G1132200.v1.1 MD09G1132600.v1.1 MD17G1120300.v1.1 |
| prunus_persica | Prupe.3G147300_v2.0.a1 Prupe.3G193800_v2.0.a1 |
| pyrus_communis | pycom09g05410 pycom17g11090 |
| rosa_chinensis | RchiOBHm_Chr2g0155491 |
| rosa_laevigata | RLG00000020840 |
| rosa_multiflora | Rmu_sc0003439.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00093670 |
| rosa_rugosa | Rorug02G0447200 Rorug02G0447200 |
| rosa_samantha | Rh2AG513600 Rh2AG513700 Rh2BG524400 Rh2BG524500 Rh2BG524600 Rh2CG498500 Rh2CG498600 Rh2DG533600 |
| rosa_wichuraiana | Rw2G042220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 786 |
| Acc36I | ACCTGC | 2 cut(s) | 2014, 2209 |
| Acc65I | GGTACC | 1 cut(s) | 1007 |
| AccB1I | GGYRCC | 5 cut(s) | 626, 1007, 1046, 1322, 1421 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 809 |
| AciI | CCGC | 2 cut(s) | 1157, 1359 |
| AclWI | GGATC | 7 cut(s) | 121, 766, 1373, 1883, 1896, 2058, 2071 |
| AcoI | YGGCCR | 2 cut(s) | 473, 667 |
| AcsI | RAATTY | 3 cut(s) | 560, 988, 1523 |
| AcuI | CTGAAG | 4 cut(s) | 365, 1023, 1090, 1635 |
| AcyI | GRCGYC | 1 cut(s) | 1047 |
| AdeI | CACNNNGTG | 1 cut(s) | 896 |
| AfaI | GTAC | 4 cut(s) | 63, 107, 1009, 1054 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 809, 1004, 1062, 1140, 2305 |
| AflII | CTTAAG | 1 cut(s) | 1565 |
| AflIII | ACRYGT | 1 cut(s) | 1384 |
| AjnI | CCWGG | 5 cut(s) | 333, 1460, 1585, 1891, 2104 |
| Alw21I | GWGCWC | 1 cut(s) | 1818 |
| Alw26I | GTCTC | 8 cut(s) | 322, 542, 651, 1018, 1272, 1461, 1979, 1981 |
| AlwI | GGATC | 7 cut(s) | 121, 766, 1373, 1883, 1896, 2058, 2071 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 557, 623 |
| AoxI | GGCC | 8 cut(s) | 5, 473, 667, 797, 1131, 1263, 1625, 1717 |
| ApoI | RAATTY | 3 cut(s) | 560, 988, 1523 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1103, 1148 |
| Asp718I | GGTACC | 1 cut(s) | 1007 |
| AspLEI | GCGC | 4 cut(s) | 470, 1027, 1049, 1585 |
| AspS9I | GGNCC | 5 cut(s) | 189, 509, 995, 1538, 1625 |
| AsuC2I | CCSGG | 1 cut(s) | 1140 |
| AsuHPI | GGTGA | 9 cut(s) | 446, 642, 753, 1075, 1258, 1313, 1405, 2086, 2201 |
| AvaII | GGWCC | 4 cut(s) | 189, 509, 995, 1538 |
| BaeGI | GKGCMC | 2 cut(s) | 1426, 2000 |
| BalI | TGGCCA | 1 cut(s) | 475 |
| BamHI | GGATCC | 2 cut(s) | 1888, 2063 |
| BanI | GGYRCC | 5 cut(s) | 626, 1007, 1046, 1322, 1421 |
| BanII | GRGCYC | 2 cut(s) | 1751, 2300 |
| Bbv12I | GWGCWC | 1 cut(s) | 1818 |
| BccI | CCATC | 9 cut(s) | 233, 383, 526, 860, 866, 1556, 2054, 2132, 2270 |
| BceAI | ACGGC | 3 cut(s) | 1012, 1310, 1667 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 911, 945 |
| BciT130I | CCWGG | 5 cut(s) | 335, 1462, 1587, 1893, 2106 |
| BciVI | GTATCC | 2 cut(s) | 1943, 2135 |
| BcnI | CCSGG | 1 cut(s) | 1140 |
| BcoDI | GTCTC | 8 cut(s) | 322, 542, 651, 1018, 1272, 1461, 1979, 1981 |
| BfaI | CTAG | 3 cut(s) | 357, 2079, 2320 |
| BfmI | CTRYAG | 5 cut(s) | 615, 1170, 1752, 1831, 2216 |
| BfoI | RGCGCY | 2 cut(s) | 1028, 1050 |
| BfrI | CTTAAG | 1 cut(s) | 1565 |
| BfuAI | ACCTGC | 2 cut(s) | 2014, 2209 |
| BfuI | GTATCC | 2 cut(s) | 1943, 2135 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1316 |
| BglII | AGATCT | 1 cut(s) | 1257 |
| BlpI | GCTNAGC | 2 cut(s) | 979, 1355 |
| Bme1390I | CCNGG | 6 cut(s) | 335, 1140, 1462, 1587, 1893, 2106 |
| Bme18I | GGWCC | 4 cut(s) | 189, 509, 995, 1538 |
| BmgT120I | GGNCC | 5 cut(s) | 189, 509, 995, 1538, 1625 |
| BmrFI | CCNGG | 6 cut(s) | 335, 1140, 1462, 1587, 1893, 2106 |
| BmrI | ACTGGG | 4 cut(s) | 723, 902, 1068, 1502 |
| BmsI | GCATC | 5 cut(s) | 313, 972, 1165, 1202, 2218 |
| BmuI | ACTGGG | 4 cut(s) | 723, 902, 1068, 1502 |
| BpmI | CTGGAG | 3 cut(s) | 786, 1765, 2088 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 979, 1355 |
| BpuMI | CCSGG | 1 cut(s) | 1140 |
| BsaHI | GRCGYC | 1 cut(s) | 1047 |
| BsaI | GGTCTC | 1 cut(s) | 1981 |
| BsaJI | CCNNGG | 8 cut(s) | 334, 670, 1028, 1087, 1139, 1326, 1460, 1461 |
| BsaWI | WCCGGW | 1 cut(s) | 992 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1374, 1404, 1441, 1471 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 809, 1004, 1062, 1140, 2305 |
| BseBI | CCWGG | 5 cut(s) | 335, 1462, 1587, 1893, 2106 |
| BseDI | CCNNGG | 8 cut(s) | 334, 670, 1028, 1087, 1139, 1326, 1460, 1461 |
| BseGI | GGATG | 5 cut(s) | 124, 304, 518, 858, 1560 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 809, 1004, 1062, 1140, 2305 |
| BseMII | CTCAG | 3 cut(s) | 305, 993, 1992 |
| BseRI | GAGGAG | 4 cut(s) | 43, 628, 1290, 1997 |
| BseSI | GKGCMC | 2 cut(s) | 1426, 2000 |
| BseYI | CCCAGC | 2 cut(s) | 695, 983 |
| BsgI | GTGCAG | 1 cut(s) | 1878 |
| BshFI | GGCC | 8 cut(s) | 7, 475, 669, 799, 1133, 1265, 1627, 1719 |
| BshNI | GGYRCC | 5 cut(s) | 626, 1007, 1046, 1322, 1421 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1818 |
| BsiSI | CCGG | 3 cut(s) | 993, 1139, 1707 |
| BslFI | GGGAC | 4 cut(s) | 1125, 1551, 1897, 2033 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 809, 1004, 1062, 1140, 2305 |
| BsmAI | GTCTC | 8 cut(s) | 322, 542, 651, 1018, 1272, 1461, 1979, 1981 |
| BsmBI | CGTCTC | 1 cut(s) | 1018 |
| BsmFI | GGGAC | 4 cut(s) | 1125, 1551, 1897, 2033 |
| BsmI | GAATGC | 1 cut(s) | 911 |
| BsnI | GGCC | 8 cut(s) | 7, 475, 669, 799, 1133, 1265, 1627, 1719 |
| Bso31I | GGTCTC | 1 cut(s) | 1981 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1426, 1751, 1818, 2000, 2300 |
| Bsp143I | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 979, 1355 |
| Bsp19I | CCATGG | 1 cut(s) | 670 |
| BspACI | CCGC | 2 cut(s) | 1157, 1359 |
| BspANI | GGCC | 8 cut(s) | 7, 475, 669, 799, 1133, 1265, 1627, 1719 |
| BspCNI | CTCAG | 3 cut(s) | 304, 992, 1991 |
| BspHI | TCATGA | 1 cut(s) | 1773 |
| BspMAI | CTGCAG | 4 cut(s) | 619, 1174, 1756, 2220 |
| BspMI | ACCTGC | 2 cut(s) | 2014, 2209 |
| BspPI | GGATC | 7 cut(s) | 121, 766, 1373, 1883, 1896, 2058, 2071 |
| BspQI | GCTCTTC | 1 cut(s) | 2192 |
| BspT107I | GGYRCC | 5 cut(s) | 626, 1007, 1046, 1322, 1421 |
| BspTI | CTTAAG | 1 cut(s) | 1565 |
| BspTNI | GGTCTC | 1 cut(s) | 1981 |
| BssECI | CCNNGG | 8 cut(s) | 334, 670, 1028, 1087, 1139, 1326, 1460, 1461 |
| BssMI | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| BssNI | GRCGYC | 1 cut(s) | 1047 |
| BssT1I | CCWWGG | 2 cut(s) | 670, 1087 |
| Bst2UI | CCWGG | 5 cut(s) | 335, 1462, 1587, 1893, 2106 |
| Bst4CI | ACNGT | 8 cut(s) | 926, 1012, 1042, 1283, 1421, 1880, 2047, 2086 |
| Bst6I | CTCTTC | 4 cut(s) | 276, 495, 2187, 2192 |
| BstACI | GRCGYC | 1 cut(s) | 1047 |
| BstAFI | CTTAAG | 1 cut(s) | 1565 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 938 |
| BstC8I | GCNNGC | 5 cut(s) | 625, 1225, 1267, 1308, 1506 |
| BstDEI | CTNAG | 6 cut(s) | 291, 979, 1355, 1452, 1978, 2241 |
| BstDSI | CCRYGG | 3 cut(s) | 670, 1028, 1326 |
| BstF5I | GGATG | 5 cut(s) | 124, 304, 518, 858, 1560 |
| BstH2I | RGCGCY | 2 cut(s) | 1028, 1050 |
| BstHHI | GCGC | 4 cut(s) | 470, 1027, 1049, 1585 |
| BstKTI | GATC | 9 cut(s) | 116, 362, 761, 1038, 1237, 1260, 1381, 1891, 2066 |
| BstMAI | GTCTC | 8 cut(s) | 322, 542, 651, 1018, 1272, 1461, 1979, 1981 |
| BstMBI | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| BstNI | CCWGG | 5 cut(s) | 335, 1462, 1587, 1893, 2106 |
| BstNSI | RCATGY | 2 cut(s) | 1388, 1868 |
| BstSCI | CCNGG | 6 cut(s) | 333, 1138, 1460, 1585, 1891, 2104 |
| BstSFI | CTRYAG | 5 cut(s) | 615, 1170, 1752, 1831, 2216 |
| BstSLI | GKGCMC | 2 cut(s) | 1426, 2000 |
| BstX2I | RGATCY | 3 cut(s) | 1257, 1888, 2063 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 525 |
| BstYI | RGATCY | 3 cut(s) | 1257, 1888, 2063 |
| BsuI | GTATCC | 2 cut(s) | 1943, 2135 |
| BsuRI | GGCC | 8 cut(s) | 7, 475, 669, 799, 1133, 1265, 1627, 1719 |
| BtgI | CCRYGG | 3 cut(s) | 670, 1028, 1326 |
| BtsCI | GGATG | 5 cut(s) | 124, 304, 518, 858, 1560 |
| BtsI | GCAGTG | 1 cut(s) | 1578 |
| BveI | ACCTGC | 2 cut(s) | 2014, 2209 |
| Cac8I | GCNNGC | 5 cut(s) | 625, 1225, 1267, 1308, 1506 |
| CaiI | CAGNNNCTG | 2 cut(s) | 557, 623 |
| CciI | TCATGA | 1 cut(s) | 1773 |
| CfoI | GCGC | 4 cut(s) | 470, 1027, 1049, 1585 |
| Cfr13I | GGNCC | 5 cut(s) | 189, 509, 995, 1538, 1625 |
| CseI | GACGC | 1 cut(s) | 1466 |
| Csp6I | GTAC | 4 cut(s) | 62, 106, 1008, 1053 |
| CviQI | GTAC | 4 cut(s) | 62, 106, 1008, 1053 |
| DdeI | CTNAG | 6 cut(s) | 291, 979, 1355, 1452, 1978, 2241 |
| DinI | GGCGCC | 1 cut(s) | 1048 |
| DpnI | GATC | 9 cut(s) | 115, 361, 760, 1037, 1236, 1259, 1380, 1890, 2065 |
| DpnII | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| DraI | TTTAAA | 1 cut(s) | 2206 |
| DraIII | CACNNNGTG | 1 cut(s) | 896 |
| EaeI | YGGCCR | 2 cut(s) | 473, 667 |
| Eam1104I | CTCTTC | 4 cut(s) | 276, 495, 2187, 2192 |
| EarI | CTCTTC | 4 cut(s) | 276, 495, 2187, 2192 |
| Eco130I | CCWWGG | 2 cut(s) | 670, 1087 |
| Eco24I | GRGCYC | 2 cut(s) | 1751, 2300 |
| Eco31I | GGTCTC | 1 cut(s) | 1981 |
| Eco32I | GATATC | 1 cut(s) | 1576 |
| Eco47I | GGWCC | 4 cut(s) | 189, 509, 995, 1538 |
| Eco57I | CTGAAG | 4 cut(s) | 365, 1023, 1090, 1635 |
| EcoO109I | RGGNCCY | 2 cut(s) | 189, 1538 |
| EcoRI | GAATTC | 1 cut(s) | 988 |
| EcoRII | CCWGG | 5 cut(s) | 333, 1460, 1585, 1891, 2104 |
| EcoRV | GATATC | 1 cut(s) | 1576 |
| EcoT14I | CCWWGG | 2 cut(s) | 670, 1087 |
| EcoT38I | GRGCYC | 2 cut(s) | 1751, 2300 |
| EgeI | GGCGCC | 1 cut(s) | 1048 |
| EheI | GGCGCC | 1 cut(s) | 1048 |
| ErhI | CCWWGG | 2 cut(s) | 670, 1087 |
| Esp3I | CGTCTC | 1 cut(s) | 1018 |
| FaqI | GGGAC | 4 cut(s) | 1125, 1551, 1897, 2033 |
| FauI | CCCGC | 2 cut(s) | 1164, 1352 |
| FauNDI | CATATG | 1 cut(s) | 97 |
| FokI | GGATG | 5 cut(s) | 111, 291, 505, 845, 1547 |
| FriOI | GRGCYC | 2 cut(s) | 1751, 2300 |
| FspBI | CTAG | 3 cut(s) | 357, 2079, 2320 |
| GlaI | GCGC | 4 cut(s) | 469, 1026, 1048, 1584 |
| GsaI | CCCAGC | 2 cut(s) | 699, 987 |
| GsuI | CTGGAG | 3 cut(s) | 786, 1765, 2088 |
| HaeII | RGCGCY | 2 cut(s) | 1028, 1050 |
| HaeIII | GGCC | 8 cut(s) | 7, 475, 669, 799, 1133, 1265, 1627, 1719 |
| HapII | CCGG | 3 cut(s) | 993, 1139, 1707 |
| HgaI | GACGC | 1 cut(s) | 1466 |
| HhaI | GCGC | 4 cut(s) | 470, 1027, 1049, 1585 |
| Hin1I | GRCGYC | 1 cut(s) | 1047 |
| Hin6I | GCGC | 4 cut(s) | 468, 1025, 1047, 1583 |
| HinP1I | GCGC | 4 cut(s) | 468, 1025, 1047, 1583 |
| HincII | GTYRAC | 1 cut(s) | 690 |
| HindII | GTYRAC | 1 cut(s) | 690 |
| HinfI | GANTC | 7 cut(s) | 169, 221, 479, 534, 554, 647, 1336 |
| HpaII | CCGG | 3 cut(s) | 993, 1139, 1707 |
| HphI | GGTGA | 9 cut(s) | 446, 642, 753, 1075, 1258, 1313, 1405, 2086, 2201 |
| Hpy166II | GTNNAC | 3 cut(s) | 106, 690, 1294 |
| Hpy188I | TCNGA | 6 cut(s) | 142, 294, 559, 1378, 1981, 2275 |
| Hpy188III | TCNNGA | 6 cut(s) | 328, 415, 1202, 1774, 2128, 2179 |
| Hpy8I | GTNNAC | 3 cut(s) | 106, 690, 1294 |
| Hpy99I | CGWCG | 2 cut(s) | 926, 1421 |
| HpyAV | CCTTC | 9 cut(s) | 52, 56, 202, 807, 998, 1243, 1280, 1522, 1730 |
| HpyCH4III | ACNGT | 8 cut(s) | 926, 1012, 1042, 1283, 1421, 1880, 2047, 2086 |
| HpyF3I | CTNAG | 6 cut(s) | 291, 979, 1355, 1452, 1978, 2241 |
| Hsp92I | GRCGYC | 1 cut(s) | 1047 |
| HspAI | GCGC | 4 cut(s) | 468, 1025, 1047, 1583 |
| KasI | GGCGCC | 1 cut(s) | 1046 |
| KflI | GGGWCCC | 1 cut(s) | 1538 |
| KpnI | GGTACC | 1 cut(s) | 1011 |
| Kzo9I | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| LguI | GCTCTTC | 1 cut(s) | 2192 |
| LmnI | GCTCC | 4 cut(s) | 587, 1513, 1746, 2295 |
| LweI | GCATC | 5 cut(s) | 313, 972, 1165, 1202, 2218 |
| MaeI | CTAG | 3 cut(s) | 357, 2079, 2320 |
| MaeIII | GTNAC | 6 cut(s) | 160, 394, 709, 888, 1081, 2074 |
| MalI | GATC | 9 cut(s) | 115, 361, 760, 1037, 1236, 1259, 1380, 1890, 2065 |
| MboI | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| MboII | GAAGA | 9 cut(s) | 287, 290, 293, 351, 449, 512, 907, 2204, 2209 |
| MflI | RGATCY | 3 cut(s) | 1257, 1888, 2063 |
| MhlI | GDGCHC | 5 cut(s) | 1426, 1751, 1818, 2000, 2300 |
| MlsI | TGGCCA | 1 cut(s) | 475 |
| MluNI | TGGCCA | 1 cut(s) | 475 |
| Mly113I | GGCGCC | 1 cut(s) | 1047 |
| MlyI | GAGTC | 2 cut(s) | 488, 641 |
| MmeI | TCCRAC | 2 cut(s) | 1505, 2151 |
| Mox20I | TGGCCA | 1 cut(s) | 475 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1103, 1148 |
| MscI | TGGCCA | 1 cut(s) | 475 |
| MseI | TTAA | 8 cut(s) | 954, 1566, 1725, 1761, 1869, 1917, 2205, 2223 |
| MslI | CAYNNNNRTG | 7 cut(s) | 252, 390, 523, 867, 968, 1685, 1993 |
| Msp20I | TGGCCA | 1 cut(s) | 475 |
| MspA1I | CMGCKG | 3 cut(s) | 695, 983, 1001 |
| MspCI | CTTAAG | 1 cut(s) | 1565 |
| MspI | CCGG | 3 cut(s) | 993, 1139, 1707 |
| MspR9I | CCNGG | 6 cut(s) | 335, 1140, 1462, 1587, 1893, 2106 |
| Mva1269I | GAATGC | 1 cut(s) | 911 |
| MvaI | CCWGG | 5 cut(s) | 335, 1462, 1587, 1893, 2106 |
| NarI | GGCGCC | 1 cut(s) | 1047 |
| NciI | CCSGG | 1 cut(s) | 1140 |
| NcoI | CCATGG | 1 cut(s) | 670 |
| NdeI | CATATG | 1 cut(s) | 97 |
| NdeII | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| NmuCI | GTSAC | 4 cut(s) | 160, 888, 1081, 2074 |
| NspI | RCATGY | 2 cut(s) | 1388, 1868 |
| PagI | TCATGA | 1 cut(s) | 1773 |
| PasI | CCCWGGG | 1 cut(s) | 1461 |
| PciI | ACATGT | 1 cut(s) | 1384 |
| PciSI | GCTCTTC | 1 cut(s) | 2192 |
| PctI | GAATGC | 1 cut(s) | 911 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1103, 1148 |
| PfeI | GAWTC | 5 cut(s) | 169, 221, 534, 554, 1336 |
| PflFI | GACNNNGTC | 1 cut(s) | 662 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 809 |
| PfoI | TCCNGGA | 1 cut(s) | 2104 |
| PleI | GAGTC | 2 cut(s) | 487, 641 |
| PluTI | GGCGCC | 1 cut(s) | 1050 |
| PpsI | GAGTC | 2 cut(s) | 487, 641 |
| PpuMI | RGGWCCY | 2 cut(s) | 189, 1538 |
| PscI | ACATGT | 1 cut(s) | 1384 |
| PsiI | TTATAA | 1 cut(s) | 786 |
| Psp5II | RGGWCCY | 2 cut(s) | 189, 1538 |
| Psp6I | CCWGG | 5 cut(s) | 333, 1460, 1585, 1891, 2104 |
| PspFI | CCCAGC | 2 cut(s) | 695, 983 |
| PspGI | CCWGG | 5 cut(s) | 333, 1460, 1585, 1891, 2104 |
| PspPI | GGNCC | 5 cut(s) | 189, 509, 995, 1538, 1625 |
| PspPPI | RGGWCCY | 2 cut(s) | 189, 1538 |
| PstI | CTGCAG | 4 cut(s) | 619, 1174, 1756, 2220 |
| PstNI | CAGNNNCTG | 2 cut(s) | 557, 623 |
| PsuI | RGATCY | 3 cut(s) | 1257, 1888, 2063 |
| PsyI | GACNNNGTC | 1 cut(s) | 662 |
| PvuII | CAGCTG | 3 cut(s) | 695, 983, 1001 |
| RsaI | GTAC | 4 cut(s) | 63, 107, 1009, 1054 |
| RsaNI | GTAC | 4 cut(s) | 62, 106, 1008, 1053 |
| RseI | CAYNNNNRTG | 7 cut(s) | 252, 390, 523, 867, 968, 1685, 1993 |
| SapI | GCTCTTC | 1 cut(s) | 2192 |
| SaqAI | TTAA | 8 cut(s) | 954, 1566, 1725, 1761, 1869, 1917, 2205, 2223 |
| Sau3AI | GATC | 9 cut(s) | 113, 359, 758, 1035, 1234, 1257, 1378, 1888, 2063 |
| Sau96I | GGNCC | 5 cut(s) | 189, 509, 995, 1538, 1625 |
| SbfI | CCTGCAGG | 1 cut(s) | 2220 |
| SchI | GAGTC | 2 cut(s) | 488, 641 |
| ScrFI | CCNGG | 6 cut(s) | 335, 1140, 1462, 1587, 1893, 2106 |
| SdaI | CCTGCAGG | 1 cut(s) | 2220 |
| SduI | GDGCHC | 5 cut(s) | 1426, 1751, 1818, 2000, 2300 |
| SfaNI | GCATC | 5 cut(s) | 313, 972, 1165, 1202, 2218 |
| SfcI | CTRYAG | 5 cut(s) | 615, 1170, 1752, 1831, 2216 |
| SfoI | GGCGCC | 1 cut(s) | 1048 |
| SinI | GGWCC | 4 cut(s) | 189, 509, 995, 1538 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 252, 390, 523, 867, 968, 1685, 1993 |
| SmlI | CTYRAG | 1 cut(s) | 1565 |
| SmoI | CTYRAG | 1 cut(s) | 1565 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2220 |
| SsiI | CCGC | 2 cut(s) | 1157, 1359 |
| SspDI | GGCGCC | 1 cut(s) | 1046 |
| SspMI | CTAG | 3 cut(s) | 357, 2079, 2320 |
| StyD4I | CCNGG | 6 cut(s) | 333, 1138, 1460, 1585, 1891, 2104 |
| StyI | CCWWGG | 2 cut(s) | 670, 1087 |
| TaaI | ACNGT | 8 cut(s) | 926, 1012, 1042, 1283, 1421, 1880, 2047, 2086 |
| TaqI | TCGA | 3 cut(s) | 1273, 1968, 2058 |
| TatI | WGTACW | 2 cut(s) | 61, 105 |
| TfiI | GAWTC | 5 cut(s) | 169, 221, 534, 554, 1336 |
| Tru1I | TTAA | 8 cut(s) | 954, 1566, 1725, 1761, 1869, 1917, 2205, 2223 |
| Tru9I | TTAA | 8 cut(s) | 954, 1566, 1725, 1761, 1869, 1917, 2205, 2223 |
| TseFI | GTSAC | 4 cut(s) | 160, 888, 1081, 2074 |
| Tsp45I | GTSAC | 4 cut(s) | 160, 888, 1081, 2074 |
| TspDTI | ATGAA | 6 cut(s) | 222, 513, 840, 935, 1504, 1518 |
| Tth111I | GACNNNGTC | 1 cut(s) | 662 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 809 |
| Vha464I | CTTAAG | 1 cut(s) | 1565 |
| VpaK11BI | GGWCC | 4 cut(s) | 189, 509, 995, 1538 |
| XapI | RAATTY | 3 cut(s) | 560, 988, 1523 |
| XceI | RCATGY | 2 cut(s) | 1388, 1868 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2135 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1103, 1148 |
| XspI | CTAG | 3 cut(s) | 357, 2079, 2320 |