Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007593

Physical Location & Seq

Genomic Coordinates Forward (+)

67110995 .. 67111432

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG498600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATCCTGGGTTGGTGTACGATTTAGACACTGATGATTACTTGAATTTGCTATGCACATTGGGATACAATGAAACACAAATCGAAACATTCTCACATGAGCCCTACAAATGCCCCAACCCTGCTATTAGTCTCGCAAACCTCAACTACCCCTCAATCACTGTCCCTAAACTCTCTGGCTCCCTTGTTGTGACGAGAACACTGAAAAATGTTGGAGAACCGGGAACTTATAAGGCACTCATCATAAACCCAGATGGTATATTGGTTTCTGTTGAGCCAAAGAGCTTGGAGTTCAAAAAGGTTGGTGAAGAAAAGAGCTTCAGTGTGGTCCTGGAGGCTAAAGATGGCAAAGCAGCAAAAAACTACGTATTTGGAAAGTTGATATGGTCAGATGGTAAGCACAATGTAAGGAGTCCCATTGTGATAAAGGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0016787 GO:0017171 GO:0019538 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0043170 GO:0044238 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

145

Amino Acids

15.89

Weight (kDa)

6.11

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	47 - 142	5e-32	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04160
fragaria_vesca	FvH4_6g40300
malus_domestica	MD09G1132200.v1.1 MD09G1132600.v1.1 MD17G1120300.v1.1
prunus_persica	Prupe.3G147300_v2.0.a1 Prupe.3G193800_v2.0.a1
pyrus_communis	pycom09g05410 pycom17g11090
rosa_chinensis	RchiOBHm_Chr2g0155491
rosa_laevigata	RLG00000020840
rosa_multiflora	Rmu_sc0003439.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093670
rosa_rugosa	Rorug02G0447200 Rorug02G0447200
rosa_samantha	Rh2AG513600 Rh2AG513700 Rh2BG524400 Rh2BG524500 Rh2BG524600 Rh2CG498500 Rh2CG498600 Rh2DG533600
rosa_wichuraiana	Rw2G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	304
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	46, 295
AjnI	CCWGG	2 cut(s)	7, 330
AluBI	AGCT	2 cut(s)	285, 318
AluI	AGCT	2 cut(s)	285, 318
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	3 cut(s)	248, 338, 386
BciT130I	CCWGG	2 cut(s)	9, 332
BciVI	GTATCC	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	354, 432
BlsI	GCNGC	2 cut(s)	355, 433
Bme1390I	CCNGG	3 cut(s)	9, 222, 332
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	2 cut(s)	6, 181
BmrFI	CCNGG	3 cut(s)	9, 222, 332
BpmI	CTGGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	9, 332
BseDI	CCNNGG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	149, 399
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	149, 399
BsnI	GGCC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	1 cut(s)	434
BspLI	GGNNCC	2 cut(s)	6, 181
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	2 cut(s)	9, 332
Bst4CI	ACNGT	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	367
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	2 cut(s)	9, 332
BstSCI	CCNGG	3 cut(s)	7, 220, 330
BstSNI	TACGTA	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	434
BtsIMutI	CAGTG	4 cut(s)	30, 159, 200, 328
Cfr13I	GGNCC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	7 cut(s)	103, 180, 277, 285, 318, 338, 434
CviKI_1	RGCY	7 cut(s)	103, 180, 277, 285, 318, 338, 434
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco105I	TACGTA	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	7, 330
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	1 cut(s)	101
FaiI	YATR	6 cut(s)	55, 99, 231, 245, 260, 385
FaqI	GGGAC	2 cut(s)	149, 399
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	354, 432
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	354, 432
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	2 cut(s)	354, 432
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	391
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	7 cut(s)	21, 135, 162, 234, 264, 317, 344
Lsp1109I	GCAGC	1 cut(s)	365
MaeI	CTAG	1 cut(s)	436
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	152, 163, 328
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	9, 222, 332
MvaI	CCWGG	2 cut(s)	9, 332
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	6, 181
NmuCI	GTSAC	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	355, 433
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Ppu21I	YACGTR	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	7, 330
PspGI	CCWGG	2 cut(s)	7, 330
PspN4I	GGNNCC	2 cut(s)	6, 181
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SatI	GCNGC	2 cut(s)	354, 432
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	9, 222, 332
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	5 cut(s)	144, 287, 303, 320, 369
SinI	GGWCC	1 cut(s)	328
SnaBI	TACGTA	1 cut(s)	367
Sse9I	AATT	1 cut(s)	46
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	436
StyD4I	CCNGG	3 cut(s)	7, 220, 330
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	46
TauI	GCSGC	1 cut(s)	434
TscAI	CASTG	4 cut(s)	37, 166, 207, 328
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	4 cut(s)	37, 166, 207, 328
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	46
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.