Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Reverse (-)

5897498 .. 5899437

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1043900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCGAAGAAAAACAAGTAACGGGCTGCTCTCCAGAAGACCCACTTACAAATTAGATAGAATTATTTTGCAGAGATATCCAAAATTCGTTGACGCACTCAGAGATATTGATGACTGCCTCACAATGGTTCACCTCTTTGTGGCATTACCTGCTATTGAGGACAGAATTGATGTCAAACGCATTCATAACTGTCGAAGGTTGAGTCATGAATGGCAAGCTTACATATCTTGGACTCATAAATTGCGTAAAGTCTTTGTATCTGCCGAGGTTAAGGGGCAAAAAGTCACATGGTTGACCCCTCACCCTTTGCAGCAAGTTTTGACTGATGATATTGATTATATTTCGTACTTTGTATTTCTTTTTGTCCGTTATCAACCTCTGTTTGATTCCGGAGTGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

135

Amino Acids

15.93

Weight (kDa)

9.65

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	7 - 120	5.3e-38	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	124, 139
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	25, 310
ApoI	RAATTY	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AsuHPI	GGTGA	2 cut(s)	122, 293
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	12, 322
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	26, 311
BlsI	GCNGC	2 cut(s)	27, 312
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	389
BsaXI	ACNNNNNCTCC	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 139
BseAI	TCCGGA	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	124, 139
BseMII	CTCAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	12, 322
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	124, 139
BsmI	GAATGC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	111
BspEI	TCCGGA	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	12, 322
BstV2I	GAAGAC	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	205
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	206, 288
CviJI	RGCY	2 cut(s)	25, 218
CviKI_1	RGCY	2 cut(s)	25, 218
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	77
FaeI	CATG	2 cut(s)	209, 291
FaiI	YATR	6 cut(s)	186, 207, 224, 237, 289, 339
FalI	AAGNNNNNCTT	2 cut(s)	28, 60
FatI	CATG	2 cut(s)	205, 287
Fnu4HI	GCNGC	2 cut(s)	26, 311
Fsp4HI	GCNGC	2 cut(s)	26, 311
GluI	GCNGC	2 cut(s)	26, 311
GsuI	CTGGAG	1 cut(s)	16
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	209, 291
HincII	GTYRAC	2 cut(s)	91, 294
HindII	GTYRAC	2 cut(s)	91, 294
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	202, 232, 386
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	2 cut(s)	122, 293
Hpy166II	GTNNAC	3 cut(s)	91, 130, 294
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	33, 206, 390
Hpy8I	GTNNAC	3 cut(s)	91, 130, 294
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	70, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	209, 291
Kpn2I	TCCGGA	1 cut(s)	389
LpnPI	CCDG	2 cut(s)	46, 162
Lsp1109I	GCAGC	2 cut(s)	12, 322
MaeIII	GTNAC	2 cut(s)	17, 283
MboII	GAAGA	2 cut(s)	18, 48
MluCI	AATT	5 cut(s)	50, 60, 83, 165, 239
MlyI	GAGTC	2 cut(s)	211, 226
MnlI	CCTC	6 cut(s)	128, 143, 151, 259, 309, 387
MroI	TCCGGA	1 cut(s)	389
MseI	TTAA	1 cut(s)	270
MspI	CCGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	209, 291
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	283
PagI	TCATGA	1 cut(s)	205
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	27, 312
PleI	GAGTC	2 cut(s)	210, 226
PpsI	GAGTC	2 cut(s)	210, 226
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	26, 311
SchI	GAGTC	2 cut(s)	211, 226
SetI	ASST	6 cut(s)	135, 151, 200, 220, 270, 379
Sse9I	AATT	5 cut(s)	50, 60, 83, 165, 239
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	193
TasI	AATT	5 cut(s)	50, 60, 83, 165, 239
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	25, 310
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	173, 222
TspGWI	ACGGA	1 cut(s)	356
XapI	RAATTY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.