RLG00000002735

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
38836873 .. 38837430
558 bp
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UTR
Exon/CDS
Intron
RLM00000002735

Sequence Viewer

Length: 558 bp
ATGGTTTTGATTTCGGATTTGGGTCAAAGGGCTGTTGCTGTGAAACTGTTTGCTGTGGTGATGGTGCAACGAACTGATGGTGGTAAGCCAGATTTACATTTTGGCTTTAGAATTGGAAGCCTGATGGAATCGGATGATGTTGGTGTTGGTTTGGTTCATTCTGTATGTGATGAGGGCAATTATGGCATTGGTGGCTCTGTTATGAAGTTTGACAACTTCCCAAGCGGTAGCTTCTCCGACAACGTGGTTGTGCCAGTTGATTTGATCATTGTGCTGGGATTGATACATTTTGGCTTTAGAATTGGTAGCCTGATGGAACCGGATGATGTTGGTGTTGGTTTGGTTCATTCTGTAGGTGATGAGGGCAATTATGGCATTGGTGGCTCTGTTATGAAGTTTGACAACTTCCCAAGCGGCAGCTTCTCTGACAACGTGGTTGTGCCAGTTGATTTGATCAATGTGCTGGGATTGATACTGGCTATGATGGTAGCGACGCCAGCAGTGGATTTGAGTGTGCTTGGATTGATACTGGCGATGGTGGTAGATGATCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.4

Weight (kDa)

4.21

Isoelectric Point (pI)

14.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 225, 414
AcsI RAATTY 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 494
AluBI AGCT 2 cut(s) 231, 420
AluI AGCT 2 cut(s) 231, 420
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 70, 368
BbvI GCAGC 1 cut(s) 429
BccI CCATC 6 cut(s) 55, 71, 118, 307, 478, 529
BclI TGATCA 3 cut(s) 264, 453, 547
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 415, 418
BlsI GCNGC 2 cut(s) 416, 419
BmiI GGNNCC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 494
BsaWI WCCGGW 1 cut(s) 319
Bse1I ACTGG 4 cut(s) 254, 443, 480, 534
BseGI GGATG 2 cut(s) 139, 328
BseNI ACTGG 4 cut(s) 254, 443, 480, 534
BseXI GCAGC 1 cut(s) 429
BseYI CCCAGC 2 cut(s) 274, 463
BsiSI CCGG 1 cut(s) 320
Bsp143I GATC 3 cut(s) 264, 453, 547
BspACI CCGC 2 cut(s) 225, 414
BspLI GGNNCC 1 cut(s) 318
BsrI ACTGG 4 cut(s) 254, 443, 480, 534
BssMI GATC 3 cut(s) 264, 453, 547
BssNI GRCGYC 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 498
BstF5I GGATG 2 cut(s) 139, 328
BstKTI GATC 3 cut(s) 267, 456, 550
BstMBI GATC 3 cut(s) 264, 453, 547
BstMWI GCNNNNNNNGC 5 cut(s) 183, 192, 372, 381, 497
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 548
BtsCI GGATG 2 cut(s) 139, 328
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 498
CseI GACGC 1 cut(s) 502
DpnI GATC 3 cut(s) 266, 455, 549
DpnII GATC 3 cut(s) 264, 453, 547
FaiI YATR 6 cut(s) 166, 183, 203, 372, 392, 482
FbaI TGATCA 3 cut(s) 264, 453, 547
Fnu4HI GCNGC 2 cut(s) 415, 418
FokI GGATG 2 cut(s) 146, 335
Fsp4HI GCNGC 2 cut(s) 415, 418
GluI GCNGC 2 cut(s) 415, 418
GsaI CCCAGC 2 cut(s) 278, 467
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 502
Hin1I GRCGYC 1 cut(s) 494
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 320
HphI GGTGA 2 cut(s) 70, 368
Hpy188I TCNGA 4 cut(s) 16, 133, 238, 427
Hpy99I CGWCG 1 cut(s) 496
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 2 cut(s) 243, 432
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 192, 372, 381, 497
HpySE526I ACGT 2 cut(s) 243, 432
Hsp92I GRCGYC 1 cut(s) 494
Ksp22I TGATCA 3 cut(s) 264, 453, 547
Kzo9I GATC 3 cut(s) 264, 453, 547
Lsp1109I GCAGC 1 cut(s) 429
MaeII ACGT 2 cut(s) 243, 432
MalI GATC 3 cut(s) 266, 455, 549
MboI GATC 3 cut(s) 264, 453, 547
MluCI AATT 5 cut(s) 111, 178, 300, 367, 552
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 2 cut(s) 166, 355
MseI TTAA 1 cut(s) 556
MspI CCGG 1 cut(s) 320
MwoI GCNNNNNNNGC 5 cut(s) 183, 192, 372, 381, 497
NdeII GATC 3 cut(s) 264, 453, 547
NlaIV GGNNCC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 416, 419
PspFI CCCAGC 2 cut(s) 274, 463
PspN4I GGNNCC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 556
SatI GCNGC 2 cut(s) 415, 418
Sau3AI GATC 3 cut(s) 264, 453, 547
SetI ASST 5 cut(s) 233, 246, 358, 422, 435
SfcI CTRYAG 1 cut(s) 351
Sse9I AATT 5 cut(s) 111, 178, 300, 367, 552
SsiI CCGC 2 cut(s) 225, 414
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 2 cut(s) 246, 435
TasI AATT 5 cut(s) 111, 178, 300, 367, 552
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 556
Tru9I TTAA 1 cut(s) 556
TscAI CASTG 1 cut(s) 507
TseI GCWGC 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 146, 218, 335, 407
TspRI CASTG 1 cut(s) 507
XapI RAATTY 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.