Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Reverse (-)

35220255 .. 35225897

Gene Structure 5643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG287600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAATCGTGGACGAGATAAAGGGGCAATTGATCACATATGGTTGACTCCTCACCCTCCTCACCCTTTGCAGCAAATTTTGACTGATGATATTGACTTTAATATCATGCTAAACTTTTTGGAGTTTTATGAGGCTCTTCTTGCTTTTGTGAAATGTCATTTATATCATTCCATAGATATTATCCCTCAAGCTTTGTGTGCTAGTTATGGACTAACTGTTGGTGCAAAACTCTCTCTCTCTAGGTTCCACTTCTTCGATCTGTTGGTCGTCCTCCCAATATCATATCCAATCAGTAAAAAAATTAGACTTTATGGTTATACTAATCTCATATGCTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

113

Amino Acids

13.11

Weight (kDa)

7.0

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	13 - 61	4.5e-12	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	75
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	44, 53
BbvI	GCAGC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	2 cut(s)	201, 240
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	39, 48
BseXI	GCAGC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	31, 256
BspLI	GGNNCC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	141
BssMI	GATC	2 cut(s)	31, 256
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	34, 259
BstMBI	GATC	2 cut(s)	31, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 197
BstV1I	GCAGC	1 cut(s)	82
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	2 cut(s)	134, 191
CviKI_1	RGCY	2 cut(s)	134, 191
DpnI	GATC	2 cut(s)	33, 258
DpnII	GATC	2 cut(s)	31, 256
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	109
FatI	CATG	1 cut(s)	105
FauNDI	CATATG	2 cut(s)	38, 329
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	2 cut(s)	201, 240
GluI	GCNGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	2 cut(s)	4, 46
HphI	GGTGA	2 cut(s)	44, 53
Hpy166II	GTNNAC	2 cut(s)	11, 45
Hpy8I	GTNNAC	2 cut(s)	11, 45
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	70, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 197
Hsp92II	CATG	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 256
LguI	GCTCTTC	1 cut(s)	141
LpnPI	CCDG	1 cut(s)	319
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	201, 240
MalI	GATC	2 cut(s)	33, 258
MboI	GATC	2 cut(s)	31, 256
MboII	GAAGA	2 cut(s)	128, 244
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	3 cut(s)	27, 75, 300
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	60, 66, 69, 124, 195, 281
MseI	TTAA	1 cut(s)	99
MunI	CAATTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	140, 197
NdeI	CATATG	2 cut(s)	38, 329
NdeII	GATC	2 cut(s)	31, 256
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	31, 256
SchI	GAGTC	1 cut(s)	40
SetI	ASST	2 cut(s)	193, 245
SgeI	CNNG	7 cut(s)	20, 26, 118, 152, 200, 213, 252
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	27, 75, 300
SspMI	CTAG	2 cut(s)	201, 240
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	27, 75, 300
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	2 cut(s)	201, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.