Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Forward (+)

37299666 .. 37303365

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG306400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTTTTGTTTTTGTATGTTCAGGACAAGATAAAGGGGCAATTGATCGCATATTTCACTCCTCACCCTTTGCAGCAAGTTTTGACTGATGATATTGACTTCAATATCAAACTAAACTTTTTGGAGTTTTATGAGGTTACATTTTTACCATTATGTCTTGTTTTTTTTTTCTCTTCAACACTGTCTCTCCTACCTTTTCAAATCTACACTTCTTCTTTCACTTACATATCATTGTTAAAGTTCCGCTCCCCTTATGTTGCAAGCTCTTCTTGCTTCTGTGAATTGTCATTTATATCGTCCCATAAATGTGAAGTATCCACCACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

109

Amino Acids

12.61

Weight (kDa)

5.47

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	5 - 47	2.5e-08	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	103, 177, 200
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	246
BssMI	GATC	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	2 cut(s)	178, 271
BstC8I	GCNNGC	1 cut(s)	262
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	262
CviJI	RGCY	1 cut(s)	264
CviKI_1	RGCY	1 cut(s)	264
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	178, 271
EarI	CTCTTC	2 cut(s)	178, 271
FaiI	YATR	8 cut(s)	18, 52, 132, 154, 227, 255, 293, 303
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FaqI	GGGAC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	23, 327
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	73, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	45
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	1 cut(s)	8
Lsp1109I	GCAGC	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	47
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	1 cut(s)	45
MboII	GAAGA	3 cut(s)	165, 204, 258
MfeI	CAATTG	1 cut(s)	41
MluCI	AATT	2 cut(s)	41, 281
MnlI	CCTC	2 cut(s)	72, 127
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	45
SetI	ASST	3 cut(s)	138, 196, 266
SgeI	CNNG	6 cut(s)	35, 40, 89, 170, 273, 282
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	41, 281
SsiI	CCGC	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	183
TasI	AATT	2 cut(s)	41, 281
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.