Rroxscaffold_7G00170290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014808
Physical Location & Seq
Forward (+)
10740401 .. 10741020
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170290.1

Sequence Viewer

Length: 495 bp
ATGTTCGATGGTGGTGTACCTATGACTAGGTGGGCGGGGCTCTATTTTCTTCTCCCTTCCGGTTGGCTTGTGGGTAGAAACGGCGATGTTTTTTCTTCGTCGTGTTTCCCTATTGCTTGGCTTCTCGCCTCTCTCTGTGTCTTGGCCAAAGATCCGGTCGCCGGGCCGGTGATGACTCGGTGCCGTCTCGGGTTTGGAGACGTGTTGATGGGGAGGGATGGTGTTGGTCCGGTTCATTTTGTTGGTGATGGTAATTATGGCGTTGGTGACTCTGCCGTGAAGCTTGACAACTTCCCCAAACCGCAGCTTTTCCCACGACGTGGTTGTCCGGTGGATTTGCGTGTGCGGGGATTGATACTAGCGACGGTGGTAGAGGTACCGGCGGTGATGCTACCGACGGTGGAGTTTGCCTTATGGGCTGGGGCTTTATGGGCTAATGGCTACGGTGGGCCTTGGACTGGCTTGTGGCCCTTAAGTTTTGGTATACTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.55

Weight (kDa)

7.66

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 2 cut(s) 180, 376
AccB7I CCANNNNNTGG 1 cut(s) 320
AccI GTMKAC 1 cut(s) 484
AciI CCGC 4 cut(s) 35, 302, 346, 383
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 2 cut(s) 18, 378
AfiI CCNNNNNNNGG 3 cut(s) 161, 320, 458
AflII CTTAAG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 201
AhlI ACTAGT 1 cut(s) 487
AjiI CACGTC 2 cut(s) 202, 320
AluBI AGCT 2 cut(s) 283, 307
AluI AGCT 2 cut(s) 283, 307
Alw26I GTCTC 2 cut(s) 191, 192
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 4 cut(s) 144, 164, 449, 467
ApeKI GCWGC 1 cut(s) 304
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
Asp718I GGTACC 1 cut(s) 376
AspS9I GGNCC 4 cut(s) 164, 227, 449, 468
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 4 cut(s) 181, 257, 278, 397
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 146
BanI GGYRCC 2 cut(s) 180, 376
BanII GRGCYC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 316
BccI CCATC 4 cut(s) 2, 202, 212, 242
BceAI ACGGC 3 cut(s) 97, 168, 260
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 191, 192
BcuI ACTAGT 1 cut(s) 487
BfaI CTAG 4 cut(s) 27, 359, 488, 493
BfrI CTTAAG 1 cut(s) 472
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 2 cut(s) 202, 320
BmgT120I GGNCC 4 cut(s) 164, 227, 449, 468
BmiI GGNNCC 2 cut(s) 182, 378
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 452
BsaWI WCCGGW 4 cut(s) 59, 154, 229, 328
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 320, 458
Bse118I RCCGGY 2 cut(s) 166, 379
Bse1I ACTGG 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 3 cut(s) 161, 320, 458
BseNI ACTGG 1 cut(s) 463
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 1 cut(s) 419
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 4 cut(s) 146, 166, 451, 469
BshNI GGYRCC 2 cut(s) 180, 376
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 7 cut(s) 60, 155, 162, 167, 230, 329, 380
BslI CCNNNNNNNGG 3 cut(s) 161, 320, 458
BsmAI GTCTC 2 cut(s) 191, 192
BsmBI CGTCTC 2 cut(s) 191, 192
BsnI GGCC 4 cut(s) 146, 166, 451, 469
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 4 cut(s) 35, 302, 346, 383
BspANI GGCC 4 cut(s) 146, 166, 451, 469
BspLI GGNNCC 2 cut(s) 182, 378
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 180, 376
BspTI CTTAAG 1 cut(s) 472
BsrFI RCCGGY 2 cut(s) 166, 379
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 2 cut(s) 166, 379
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 1 cut(s) 151
BssNAI GTATAC 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 452
Bst1107I GTATAC 1 cut(s) 485
Bst4CI ACNGT 3 cut(s) 367, 400, 446
BstAFI CTTAAG 1 cut(s) 472
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 191, 192
BstMBI GATC 1 cut(s) 151
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 416, 431
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BstZ17I GTATAC 1 cut(s) 485
BsuRI GGCC 4 cut(s) 146, 166, 451, 469
BtgZI GCGATG 1 cut(s) 99
BtrI CACGTC 2 cut(s) 202, 320
BtsCI GGATG 1 cut(s) 223
Cfr10I RCCGGY 2 cut(s) 166, 379
Cfr13I GGNCC 4 cut(s) 164, 227, 449, 468
Csp6I GTAC 2 cut(s) 17, 377
CviQI GTAC 2 cut(s) 17, 377
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DraIII CACNNNGTG 1 cut(s) 320
DrdI GACNNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 452
Esp3I CGTCTC 2 cut(s) 191, 192
FaiI YATR 5 cut(s) 23, 258, 415, 430, 485
FauI CCCGC 2 cut(s) 28, 339
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 4 cut(s) 27, 359, 488, 493
GluI GCNGC 1 cut(s) 305
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 4 cut(s) 146, 166, 451, 469
HapII CCGG 7 cut(s) 60, 155, 162, 167, 230, 329, 380
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 175, 269
HpaII CCGG 7 cut(s) 60, 155, 162, 167, 230, 329, 380
HphI GGTGA 4 cut(s) 181, 257, 278, 397
Hpy166II GTNNAC 2 cut(s) 17, 485
Hpy8I GTNNAC 2 cut(s) 17, 485
Hpy99I CGWCG 4 cut(s) 103, 321, 367, 400
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 3 cut(s) 367, 400, 446
HpyCH4IV ACGT 2 cut(s) 201, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 431
HpySE526I ACGT 2 cut(s) 201, 319
KpnI GGTACC 1 cut(s) 380
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 9 cut(s) 73, 168, 175, 180, 243, 342, 393, 405, 444
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 378
MaeI CTAG 4 cut(s) 27, 359, 488, 493
MaeII ACGT 2 cut(s) 201, 319
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 41, 87
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 42
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 2 cut(s) 169, 263
MnlI CCTC 3 cut(s) 139, 207, 367
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 472
MspI CCGG 7 cut(s) 60, 155, 162, 167, 230, 329, 380
MspR9I CCNGG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 416, 431
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 182, 378
NmuCI GTSAC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 2 cut(s) 169, 263
PpsI GAGTC 2 cut(s) 169, 263
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 2 cut(s) 182, 378
PspPI GGNCC 4 cut(s) 164, 227, 449, 468
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 2 cut(s) 18, 378
RsaNI GTAC 2 cut(s) 17, 377
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 4 cut(s) 164, 227, 449, 468
SchI GAGTC 2 cut(s) 169, 263
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 42
SetI ASST 7 cut(s) 22, 32, 204, 285, 309, 322, 378
SfaNI GCATC 1 cut(s) 378
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
SpeI ACTAGT 1 cut(s) 487
Sse9I AATT 1 cut(s) 253
SsiI CCGC 4 cut(s) 35, 302, 346, 383
SspMI CTAG 4 cut(s) 27, 359, 488, 493
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 3 cut(s) 367, 400, 446
TaiI ACGT 2 cut(s) 204, 322
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 253
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 320
Vha464I CTTAAG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 4 cut(s) 27, 359, 488, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.