Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD10G1043900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861 |
| rosa_laevigata | RLG00000002735 RLG00000009539 RLG00000029900 |
| rosa_multiflora | Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032 |
| rosa_roxburghii | Rroxscaffold_2G00123090 Rroxscaffold_7G00170290 |
| rosa_rugosa | Rorug02G0231000 |
| rosa_samantha | Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 305 |
| AcsI | RAATTY | 1 cut(s) | 33 |
| AfaI | GTAC | 2 cut(s) | 62, 83 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AgsI | TTSAA | 1 cut(s) | 211 |
| AluBI | AGCT | 2 cut(s) | 20, 225 |
| AluI | AGCT | 2 cut(s) | 20, 225 |
| Alw21I | GWGCWC | 1 cut(s) | 17 |
| Alw44I | GTGCAC | 1 cut(s) | 13 |
| AlwI | GGATC | 1 cut(s) | 305 |
| ApaLI | GTGCAC | 1 cut(s) | 13 |
| ApeKI | GCWGC | 1 cut(s) | 181 |
| ApoI | RAATTY | 1 cut(s) | 33 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| BaeGI | GKGCMC | 1 cut(s) | 17 |
| Bbv12I | GWGCWC | 1 cut(s) | 17 |
| BbvI | GCAGC | 1 cut(s) | 193 |
| BccI | CCATC | 2 cut(s) | 19, 129 |
| BciVI | GTATCC | 1 cut(s) | 306 |
| BclI | TGATCA | 1 cut(s) | 153 |
| BfuI | GTATCC | 1 cut(s) | 306 |
| BisI | GCNGC | 1 cut(s) | 182 |
| BlpI | GCTNAGC | 1 cut(s) | 221 |
| BlsI | GCNGC | 1 cut(s) | 183 |
| BmsI | GCATC | 1 cut(s) | 88 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 96 |
| BsaBI | GATNNNNATC | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bse8I | GATNNNNATC | 1 cut(s) | 120 |
| BseCI | ATCGAT | 1 cut(s) | 96 |
| BseGI | GGATG | 1 cut(s) | 121 |
| BseJI | GATNNNNATC | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseSI | GKGCMC | 1 cut(s) | 17 |
| BseXI | GCAGC | 1 cut(s) | 193 |
| BshVI | ATCGAT | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 1 cut(s) | 17 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 1 cut(s) | 17 |
| Bsp143I | GATC | 2 cut(s) | 153, 310 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 221 |
| BspDI | ATCGAT | 1 cut(s) | 96 |
| BspPI | GGATC | 1 cut(s) | 305 |
| BspQI | GCTCTTC | 1 cut(s) | 252 |
| BssMI | GATC | 2 cut(s) | 153, 310 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstDEI | CTNAG | 2 cut(s) | 104, 221 |
| BstF5I | GGATG | 1 cut(s) | 121 |
| BstKTI | GATC | 2 cut(s) | 156, 313 |
| BstMBI | GATC | 2 cut(s) | 153, 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 251 |
| BstSLI | GKGCMC | 1 cut(s) | 17 |
| BstV1I | GCAGC | 1 cut(s) | 193 |
| Bsu15I | ATCGAT | 1 cut(s) | 96 |
| BsuI | GTATCC | 1 cut(s) | 306 |
| BsuTUI | ATCGAT | 1 cut(s) | 96 |
| BtsCI | GGATG | 1 cut(s) | 121 |
| ClaI | ATCGAT | 1 cut(s) | 96 |
| CseI | GACGC | 1 cut(s) | 243 |
| Csp6I | GTAC | 2 cut(s) | 61, 82 |
| CviAII | CATG | 3 cut(s) | 47, 159, 217 |
| CviJI | RGCY | 4 cut(s) | 10, 20, 225, 245 |
| CviKI_1 | RGCY | 4 cut(s) | 10, 20, 225, 245 |
| CviQI | GTAC | 2 cut(s) | 61, 82 |
| DdeI | CTNAG | 2 cut(s) | 104, 221 |
| DpnI | GATC | 2 cut(s) | 155, 312 |
| DpnII | GATC | 2 cut(s) | 153, 310 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| FaeI | CATG | 3 cut(s) | 50, 162, 220 |
| FaiI | YATR | 5 cut(s) | 48, 160, 218, 240, 274 |
| FatI | CATG | 3 cut(s) | 46, 158, 216 |
| FbaI | TGATCA | 1 cut(s) | 153 |
| Fnu4HI | GCNGC | 1 cut(s) | 182 |
| FokI | GGATG | 1 cut(s) | 128 |
| Fsp4HI | GCNGC | 1 cut(s) | 182 |
| GluI | GCNGC | 1 cut(s) | 182 |
| HgaI | GACGC | 1 cut(s) | 243 |
| Hin1II | CATG | 3 cut(s) | 50, 162, 220 |
| HincII | GTYRAC | 1 cut(s) | 165 |
| HindII | GTYRAC | 1 cut(s) | 165 |
| HindIII | AAGCTT | 1 cut(s) | 223 |
| HinfI | GANTC | 1 cut(s) | 50 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 2 cut(s) | 15, 165 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy8I | GTNNAC | 2 cut(s) | 15, 165 |
| HpyCH4V | TGCA | 3 cut(s) | 15, 101, 181 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 251 |
| HpyF3I | CTNAG | 2 cut(s) | 104, 221 |
| Hsp92II | CATG | 3 cut(s) | 50, 162, 220 |
| Ksp22I | TGATCA | 1 cut(s) | 153 |
| Kzo9I | GATC | 2 cut(s) | 153, 310 |
| LguI | GCTCTTC | 1 cut(s) | 252 |
| Lsp1109I | GCAGC | 1 cut(s) | 193 |
| LweI | GCATC | 1 cut(s) | 88 |
| MalI | GATC | 2 cut(s) | 155, 312 |
| MboI | GATC | 2 cut(s) | 153, 310 |
| MboII | GAAGA | 1 cut(s) | 239 |
| MfeI | CAATTG | 1 cut(s) | 149 |
| MhlI | GDGCHC | 1 cut(s) | 17 |
| MluCI | AATT | 3 cut(s) | 33, 149, 262 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MmeI | TCCRAC | 1 cut(s) | 33 |
| MnlI | CCTC | 2 cut(s) | 130, 235 |
| MunI | CAATTG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 251 |
| NdeII | GATC | 2 cut(s) | 153, 310 |
| NlaIII | CATG | 3 cut(s) | 50, 162, 220 |
| PciSI | GCTCTTC | 1 cut(s) | 252 |
| PkrI | GCNGC | 1 cut(s) | 183 |
| PleI | GAGTC | 1 cut(s) | 58 |
| PpsI | GAGTC | 1 cut(s) | 58 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 74, 106 |
| RsaI | GTAC | 2 cut(s) | 62, 83 |
| RsaNI | GTAC | 2 cut(s) | 61, 82 |
| SapI | GCTCTTC | 1 cut(s) | 252 |
| SatI | GCNGC | 1 cut(s) | 182 |
| Sau3AI | GATC | 2 cut(s) | 153, 310 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SduI | GDGCHC | 1 cut(s) | 17 |
| SetI | ASST | 3 cut(s) | 22, 141, 227 |
| SfaNI | GCATC | 1 cut(s) | 88 |
| SgeI | CNNG | 8 cut(s) | 59, 91, 97, 148, 171, 197, 229, 263 |
| Sse9I | AATT | 3 cut(s) | 33, 149, 262 |
| TaqI | TCGA | 2 cut(s) | 96, 135 |
| TasI | AATT | 3 cut(s) | 33, 149, 262 |
| TatI | WGTACW | 1 cut(s) | 60 |
| TseI | GCWGC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 1 cut(s) | 82 |
| VneI | GTGCAC | 1 cut(s) | 13 |
| XapI | RAATTY | 1 cut(s) | 33 |