Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Forward (+)

56800771 .. 56811890

Gene Structure 11120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGACAATTCGGAATGTTCGAGTTGCCACGGGTTCGCCGGATTTTTTCCGAAACCGGCAAGAGCTCCGTTCGACGCAGCATTGGCGAAGTTTCTCCACTGCACCTGACGAGATAAAGGGGCAATTGATCACCTGGTTGACTCCTCACCATTTGCAGCAAGTTTTGACTGATGATATTGACTTTAATATCATGCTAAACTTTTTGGAGTTTTATGAGATTATCCCTCAAGCTTTGTGTGCTAGTTATGGACTAACTGTTGGTGCAAAACTCTCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

93

Amino Acids

10.75

Weight (kDa)

6.82

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	38 - 75	1.2e-11	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	67, 233
AluI	AGCT	2 cut(s)	67, 233
Alw21I	GWGCWC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	79, 157
AsuHPI	GGTGA	2 cut(s)	124, 140
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	91, 169
BciT130I	CCWGG	1 cut(s)	136
BclI	TGATCA	1 cut(s)	129
BfaI	CTAG	2 cut(s)	243, 280
BisI	GCNGC	2 cut(s)	80, 158
BlsI	GCNGC	2 cut(s)	81, 159
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	91, 169
BsgI	GTGCAG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	41, 58
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 239
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	91, 169
BstV2I	GAAGAC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	57
CseI	GACGC	1 cut(s)	85
CsiI	ACCWGGT	1 cut(s)	134
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	2 cut(s)	67, 233
CviKI_1	RGCY	2 cut(s)	67, 233
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	194, 216, 249
FatI	CATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	80, 158
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	80, 158
FspBI	CTAG	2 cut(s)	243, 280
GluI	GCNGC	2 cut(s)	80, 158
HapII	CCGG	2 cut(s)	41, 58
HgaI	GACGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	41, 58
HphI	GGTGA	2 cut(s)	124, 140
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	15, 53
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	104, 157, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 239
Hsp92II	CATG	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	5 cut(s)	54, 71, 120, 121, 148
Lsp1109I	GCAGC	2 cut(s)	91, 169
MabI	ACCWGGT	1 cut(s)	134
MaeI	CTAG	2 cut(s)	243, 280
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	9, 125
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	156, 237
MseI	TTAA	1 cut(s)	186
MspI	CCGG	2 cut(s)	41, 58
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	85, 239
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	81, 159
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	80, 158
Sau3AI	GATC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	4 cut(s)	69, 109, 137, 235
SexAI	ACCWGGT	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	9, 125
SspMI	CTAG	2 cut(s)	243, 280
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	22, 74
TasI	AATT	2 cut(s)	9, 125
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	2 cut(s)	79, 157
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	106
XspI	CTAG	2 cut(s)	243, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.