Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Reverse (-)

40603965 .. 40605689

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG351500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGTGAAGAAGAAGCATTACAGGCCTGCCGGCAAGAAAAAGGAAGGAAACGCGGCCAGGTTCGTCACCAGGTCCCAAGCCGTCAAGCAACTCCAAGTCAATCTTCCCCTCTTCAGGAAACTATGCATTCTGAAGGGTATATTCCCTCGGGAGCCGAAGAAAAAGGTGAAGGGAAATCACCATACGTATTATCACTTGAAGGATGTTTCATTCATTCAACACGAACCGCTGCTCGGCAAGATGAGGGACATCAGGGCATATGAAAAGAAAGTAAAGAAAGCCGAGGCGAAGAAGAACAGAGACCGTGCTAATATTCTCAGGCAGAGAAGACCCACTTACAAGTTAGATAAAGTCATTTTGCAGAGGTATCCGAAGTTCATTGATGCATTGAGAGATTTGGATGATTGTCTCACAATGGTTCACCTCTTTGCGGCCTTACCTGCTATAGAGGATAGAATTGACGTGAAACGCATCCATAACTGTAGGAGGATGAGCCATGAATGGCAAGCTTTTATATCTCGGACTCATAAATTGCGCAAAGCCGAGGTAAAGGGGCAATTGATCACATGGTTGACTCCTCACCCTTTGCAGCAAGTTTTGACTGATGATGTTGACTTCAATATCATGCTAAACTTTGTGGAGTTTTATGAGGCTCTTCTTGCTTTTGTGAATTGTCATTTATATCGTTCCATAAATGTGAAGTATCCACCAATTCTTGATCCTCGATTGGAAGCTTTTGCAGCCGAACTGTATGCGCCATCAAGATACTTCGATGCAAGTTCTCGGTCCTCTGTGTTGGACCCTCAGGTTTCAAGTTTGGCTGGATCCGGTAAAGTTGATGAGTCCGAATTAAGACTTGCCCAACTTCAGCATCAGCTTCCTTCCAATGAACCTGGTGCATCAGCTTCCTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

305

Amino Acids

35.44

Weight (kDa)

9.9

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	12 - 252	2.2e-92	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	448
AccII	CGCG	1 cut(s)	53
AciI	CCGC	3 cut(s)	53, 227, 431
AclWI	GGATC	3 cut(s)	713, 819, 832
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	3 cut(s)	97, 152, 851
AfiI	CCNNNNNNNGG	3 cut(s)	114, 233, 430
AgsI	TTSAA	4 cut(s)	199, 218, 619, 813
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	3 cut(s)	56, 68, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	4 cut(s)	509, 734, 877, 905
AluI	AGCT	4 cut(s)	509, 734, 877, 905
Alw26I	GTCTC	2 cut(s)	294, 413
AlwI	GGATC	3 cut(s)	713, 819, 832
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	3 cut(s)	23, 54, 432
ApeKI	GCWGC	3 cut(s)	229, 589, 740
AspLEI	GCGC	2 cut(s)	537, 757
AspS9I	GGNCC	3 cut(s)	72, 786, 799
AsuHPI	GGTGA	6 cut(s)	16, 58, 170, 178, 413, 572
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	3 cut(s)	72, 786, 799
AxyI	CCTNAGG	1 cut(s)	804
BamHI	GGATCC	1 cut(s)	824
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	216, 601, 752
BccI	CCATC	1 cut(s)	766
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	3 cut(s)	58, 70, 894
BciVI	GTATCC	2 cut(s)	378, 714
BclI	TGATCA	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	294, 413
BfmI	CTRYAG	2 cut(s)	444, 481
BfuAI	ACCTGC	1 cut(s)	448
BfuI	GTATCC	2 cut(s)	378, 714
BisI	GCNGC	5 cut(s)	54, 230, 432, 590, 741
BlsI	GCNGC	5 cut(s)	55, 231, 433, 591, 742
Bme1390I	CCNGG	3 cut(s)	58, 70, 894
Bme18I	GGWCC	3 cut(s)	72, 786, 799
BmeT110I	CYCGRG	1 cut(s)	147
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	3 cut(s)	72, 786, 799
BmiI	GGNNCC	4 cut(s)	74, 153, 801, 826
BmrFI	CCNGG	3 cut(s)	58, 70, 894
BmsI	GCATC	5 cut(s)	373, 480, 763, 880, 908
BpiI	GAAGAC	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	146, 282, 543
BsaWI	WCCGGW	1 cut(s)	827
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 233, 430
Bse118I	RCCGGY	1 cut(s)	29
Bse21I	CCTNAGG	1 cut(s)	804
BseBI	CCWGG	3 cut(s)	58, 70, 894
BseDI	CCNNGG	3 cut(s)	146, 282, 543
BseGI	GGATG	4 cut(s)	208, 406, 471, 495
BseLI	CCNNNNNNNGG	3 cut(s)	114, 233, 430
BseMII	CTCAG	2 cut(s)	331, 818
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	3 cut(s)	216, 601, 752
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	25, 56, 434
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	30, 828
BslFI	GGGAC	2 cut(s)	58, 260
BslI	CCNNNNNNNGG	3 cut(s)	114, 233, 430
BsmAI	GTCTC	2 cut(s)	294, 413
BsmFI	GGGAC	2 cut(s)	58, 260
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	3 cut(s)	25, 56, 434
Bso31I	GGTCTC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	561, 718, 824
BspACI	CCGC	3 cut(s)	53, 227, 431
BspANI	GGCC	3 cut(s)	25, 56, 434
BspCNI	CTCAG	2 cut(s)	330, 817
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	4 cut(s)	74, 153, 801, 826
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	3 cut(s)	713, 819, 832
BspQI	GCTCTTC	1 cut(s)	660
BspTNI	GGTCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	146, 282, 543
BssMI	GATC	3 cut(s)	561, 718, 824
Bst2UI	CCWGG	3 cut(s)	58, 70, 894
Bst4CI	ACNGT	3 cut(s)	305, 482, 750
Bst6I	CTCTTC	2 cut(s)	116, 660
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	27, 31, 507
BstDEI	CTNAG	2 cut(s)	317, 804
BstF5I	GGATG	4 cut(s)	208, 406, 471, 495
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	537, 757
BstKTI	GATC	3 cut(s)	564, 721, 827
BstMAI	GTCTC	2 cut(s)	294, 413
BstMBI	GATC	3 cut(s)	561, 718, 824
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 440, 659, 740
BstNI	CCWGG	3 cut(s)	58, 70, 894
BstSCI	CCNGG	3 cut(s)	56, 68, 892
BstSFI	CTRYAG	2 cut(s)	444, 481
BstSNI	TACGTA	1 cut(s)	186
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	216, 601, 752
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
Bsu36I	CCTNAGG	1 cut(s)	804
BsuI	GTATCC	2 cut(s)	378, 714
BsuRI	GGCC	3 cut(s)	25, 56, 434
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	4 cut(s)	208, 406, 471, 495
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	27, 31, 507
CfoI	GCGC	2 cut(s)	537, 757
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	72, 786, 799
CsiI	ACCWGGT	2 cut(s)	68, 892
CviAII	CATG	3 cut(s)	497, 567, 625
DdeI	CTNAG	2 cut(s)	317, 804
DpnI	GATC	3 cut(s)	563, 720, 826
DpnII	GATC	3 cut(s)	561, 718, 824
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	116, 660
EarI	CTCTTC	2 cut(s)	116, 660
Eco105I	TACGTA	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	294
Eco47I	GGWCC	3 cut(s)	72, 786, 799
Eco57I	CTGAAG	3 cut(s)	97, 152, 851
Eco81I	CCTNAGG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	3 cut(s)	56, 68, 892
EcoT22I	ATGCAT	2 cut(s)	128, 388
FaeI	CATG	3 cut(s)	500, 570, 628
FalI	AAGNNNNNCTT	4 cut(s)	87, 119, 319, 351
FaqI	GGGAC	2 cut(s)	58, 260
FatI	CATG	3 cut(s)	496, 566, 624
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	54, 230, 432, 590, 741
FokI	GGATG	4 cut(s)	215, 413, 458, 502
Fsp4HI	GCNGC	5 cut(s)	54, 230, 432, 590, 741
FspI	TGCGCA	1 cut(s)	536
GlaI	GCGC	2 cut(s)	536, 756
GluI	GCNGC	5 cut(s)	54, 230, 432, 590, 741
HaeIII	GGCC	3 cut(s)	25, 56, 434
HapII	CCGG	2 cut(s)	30, 828
HhaI	GCGC	2 cut(s)	537, 757
Hin1II	CATG	3 cut(s)	500, 570, 628
Hin6I	GCGC	2 cut(s)	535, 755
HinP1I	GCGC	2 cut(s)	535, 755
HincII	GTYRAC	2 cut(s)	573, 613
HindII	GTYRAC	2 cut(s)	573, 613
HindIII	AAGCTT	2 cut(s)	507, 732
HinfI	GANTC	3 cut(s)	523, 574, 842
HpaII	CCGG	2 cut(s)	30, 828
HphI	GGTGA	6 cut(s)	16, 58, 170, 178, 413, 572
Hpy166II	GTNNAC	3 cut(s)	421, 573, 613
Hpy188I	TCNGA	4 cut(s)	132, 372, 522, 847
Hpy188III	TCNNGA	4 cut(s)	115, 149, 716, 762
Hpy8I	GTNNAC	3 cut(s)	421, 573, 613
HpyAV	CCTTC	5 cut(s)	38, 127, 163, 193, 891
HpyCH4III	ACNGT	3 cut(s)	305, 482, 750
HpyCH4IV	ACGT	2 cut(s)	185, 462
HpyCH4V	TGCA	7 cut(s)	126, 361, 386, 589, 740, 776, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 440, 659, 740
HpyF3I	CTNAG	2 cut(s)	317, 804
HpySE526I	ACGT	2 cut(s)	185, 462
Hsp92II	CATG	3 cut(s)	500, 570, 628
HspAI	GCGC	2 cut(s)	535, 755
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	561, 718, 824
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	3 cut(s)	216, 601, 752
LweI	GCATC	5 cut(s)	373, 480, 763, 880, 908
MabI	ACCWGGT	2 cut(s)	68, 892
MaeII	ACGT	2 cut(s)	185, 462
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	563, 720, 826
MboI	GATC	3 cut(s)	561, 718, 824
MboII	GAAGA	9 cut(s)	19, 22, 95, 103, 169, 301, 304, 339, 647
MfeI	CAATTG	1 cut(s)	557
MflI	RGATCY	1 cut(s)	824
MluCI	AATT	6 cut(s)	456, 530, 557, 670, 711, 848
MlyI	GAGTC	3 cut(s)	517, 568, 851
MmeI	TCCRAC	1 cut(s)	777
Mph1103I	ATGCAT	2 cut(s)	128, 388
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	1 cut(s)	851
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	2 cut(s)	30, 828
MspR9I	CCNGG	3 cut(s)	58, 70, 894
MunI	CAATTG	1 cut(s)	557
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	3 cut(s)	58, 70, 894
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	22, 440, 659, 740
NaeI	GCCGGC	1 cut(s)	31
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	561, 718, 824
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	3 cut(s)	500, 570, 628
NlaIV	GGNNCC	4 cut(s)	74, 153, 801, 826
NmeAIII	GCCGAG	3 cut(s)	213, 307, 568
NmuCI	GTSAC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	536
NsiI	ATGCAT	2 cut(s)	128, 388
PceI	AGGCCT	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	55, 231, 433, 591, 742
PleI	GAGTC	3 cut(s)	517, 568, 850
PpsI	GAGTC	3 cut(s)	517, 568, 850
Ppu21I	YACGTR	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	3 cut(s)	56, 68, 892
PspGI	CCWGG	3 cut(s)	56, 68, 892
PspN4I	GGNNCC	4 cut(s)	74, 153, 801, 826
PspPI	GGNCC	3 cut(s)	72, 786, 799
PspPPI	RGGWCCY	1 cut(s)	72
PsrI	GAACNNNNNNTAC	2 cut(s)	359, 391
PsuI	RGATCY	1 cut(s)	824
RseI	CAYNNNNRTG	1 cut(s)	695
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	1 cut(s)	851
SatI	GCNGC	5 cut(s)	54, 230, 432, 590, 741
Sau3AI	GATC	3 cut(s)	561, 718, 824
Sau96I	GGNCC	3 cut(s)	72, 786, 799
SchI	GAGTC	3 cut(s)	517, 568, 851
ScrFI	CCNGG	3 cut(s)	58, 70, 894
SexAI	ACCWGGT	2 cut(s)	68, 892
SfaNI	GCATC	5 cut(s)	373, 480, 763, 880, 908
SfcI	CTRYAG	2 cut(s)	444, 481
SinI	GGWCC	3 cut(s)	72, 786, 799
SmiMI	CAYNNNNRTG	1 cut(s)	695
SnaBI	TACGTA	1 cut(s)	186
Sse9I	AATT	6 cut(s)	456, 530, 557, 670, 711, 848
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	53, 227, 431
SspI	AATATT	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	56, 68, 892
TaaI	ACNGT	3 cut(s)	305, 482, 750
TaiI	ACGT	2 cut(s)	188, 465
TaqI	TCGA	2 cut(s)	724, 771
TaqII	GACCGA	1 cut(s)	774
TasI	AATT	6 cut(s)	456, 530, 557, 670, 711, 848
TauI	GCSGC	2 cut(s)	56, 434
Tru1I	TTAA	1 cut(s)	851
Tru9I	TTAA	1 cut(s)	851
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	3 cut(s)	229, 589, 740
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	6 cut(s)	198, 202, 276, 367, 513, 903
VpaK11BI	GGWCC	3 cut(s)	72, 786, 799
Zsp2I	ATGCAT	2 cut(s)	128, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.