Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Reverse (-)

44991161 .. 45009323

Gene Structure 18163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACCTCCACGCCTCTTCTCCCGACGACTCCCTCGCCTCCCTCTGTATCACCTCCGGGCAAGAAGAAGGAAGGAAACGCCGCCAGGTTCGTCACCAGGTCCCAAGCCGTCAAGCAACTCCAAGTCAATCTTCCCCTCTTCAGGAAACTATGCATTCTGAAGGGTATATTCCCTCGGGAGCCGAAGAAAAAGGTGAAGGGAAATCACCATACGTATTATCACTTGAAGGATGTTTCATTCATTCAACACGAACCGCTGCTCGGCAAGATGAGGGACATCAGGGCATATGAAAAGAAAGTAAAGAAAGCCGAGGCGAAGAAGAACAGGGACCGTGCTATTATTCTCAGGCAGAGAAGACCCACTTACAAATTAGATAAAGTCATTCTGCAGAGGTATCCAAAGTTCATTGATGCATTGAGAGATTTGGATGATTGTCTCACAATGGTTCACCTCTTTGCGGCCTTACCTGCTATAGAGGATAGAATTGACGTGAAACGCATCCATAACTGTCGGAGGATGAGCCATGAATGGCAAGCTTTCATATCTCGGACTCATAAATTGCGCAAAGTCTTTGTATCTGTTAAAGGCATATATTATCAGGCCGAGGTAAAGGGGCAATTGATCACATGGTTGACTCCTCACCCTTTGCAGCAAGTTTTGACTGATGATGTTGACTTCAATATCATGCTCAACTTTTTGAGGCTCTTCTTGCTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

239

Amino Acids

27.98

Weight (kDa)

10.23

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	21 - 237	4.1e-94	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	563
Acc36I	ACCTGC	1 cut(s)	475
AciI	CCGC	3 cut(s)	81, 254, 458
AcuI	CTGAAG	2 cut(s)	124, 179
AfiI	CCNNNNNNNGG	3 cut(s)	141, 260, 457
AgsI	TTSAA	3 cut(s)	226, 245, 679
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	83, 95
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	459, 600
ApeKI	GCWGC	2 cut(s)	256, 649
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	99, 328
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	6 cut(s)	42, 85, 197, 205, 440, 632
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	2 cut(s)	99, 328
BbsI	GAAGAC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	243, 661
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	85, 97
BciVI	GTATCC	1 cut(s)	405
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	386, 471
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	405
BisI	GCNGC	4 cut(s)	81, 257, 459, 650
BlsI	GCNGC	4 cut(s)	82, 258, 460, 651
Bme1390I	CCNGG	3 cut(s)	57, 85, 97
Bme18I	GGWCC	2 cut(s)	99, 328
BmeT110I	CYCGRG	1 cut(s)	174
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	99, 328
BmiI	GGNNCC	3 cut(s)	101, 180, 329
BmrFI	CCNGG	3 cut(s)	57, 85, 97
BmsI	GCATC	2 cut(s)	400, 507
BpiI	GAAGAC	1 cut(s)	361
BpuMI	CCSGG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	173, 309, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 260, 457
BseBI	CCWGG	2 cut(s)	85, 97
BseDI	CCNNGG	3 cut(s)	173, 309, 603
BseGI	GGATG	4 cut(s)	235, 433, 498, 522
BseLI	CCNNNNNNNGG	3 cut(s)	141, 260, 457
BseMII	CTCAG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	627
BseXI	GCAGC	2 cut(s)	243, 661
BshFI	GGCC	2 cut(s)	461, 602
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	3 cut(s)	85, 287, 341
BslI	CCNNNNNNNGG	3 cut(s)	141, 260, 457
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	3 cut(s)	85, 287, 341
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	461, 602
BsoBI	CYCGRG	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	621
BspACI	CCGC	3 cut(s)	81, 254, 458
BspANI	GGCC	2 cut(s)	461, 602
BspCNI	CTCAG	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	101, 180, 329
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	710
BssECI	CCNNGG	3 cut(s)	173, 309, 603
BssMI	GATC	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	85, 97
Bst4CI	ACNGT	2 cut(s)	332, 509
Bst6I	CTCTTC	3 cut(s)	21, 143, 710
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	4 cut(s)	235, 433, 498, 522
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	1 cut(s)	624
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	621
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 709
BstNI	CCWGG	2 cut(s)	85, 97
BstSCI	CCNGG	3 cut(s)	55, 83, 95
BstSFI	CTRYAG	2 cut(s)	386, 471
BstSNI	TACGTA	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	243, 661
BstV2I	GAAGAC	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	461, 602
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	235, 433, 498, 522
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	534
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	99, 328
CsiI	ACCWGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	524, 627, 685
CviJI	RGCY	8 cut(s)	107, 181, 308, 461, 522, 536, 602, 703
CviKI_1	RGCY	8 cut(s)	107, 181, 308, 461, 522, 536, 602, 703
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	1 cut(s)	623
DpnII	GATC	1 cut(s)	621
Eam1104I	CTCTTC	3 cut(s)	21, 143, 710
EarI	CTCTTC	3 cut(s)	21, 143, 710
Eco105I	TACGTA	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	99, 328
Eco57I	CTGAAG	2 cut(s)	124, 179
Eco88I	CYCGRG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	83, 95
EcoT22I	ATGCAT	2 cut(s)	155, 415
FaeI	CATG	3 cut(s)	527, 630, 688
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 346, 378
FaqI	GGGAC	3 cut(s)	85, 287, 341
FatI	CATG	3 cut(s)	523, 626, 684
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	81, 257, 459, 650
FokI	GGATG	4 cut(s)	242, 440, 485, 529
Fsp4HI	GCNGC	4 cut(s)	81, 257, 459, 650
FspI	TGCGCA	1 cut(s)	563
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	4 cut(s)	81, 257, 459, 650
HaeIII	GGCC	2 cut(s)	461, 602
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	3 cut(s)	527, 630, 688
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	2 cut(s)	633, 673
HindII	GTYRAC	2 cut(s)	633, 673
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	28, 550, 634
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	6 cut(s)	42, 85, 197, 205, 440, 632
Hpy166II	GTNNAC	3 cut(s)	448, 633, 673
Hpy188I	TCNGA	3 cut(s)	159, 513, 549
Hpy188III	TCNNGA	3 cut(s)	22, 142, 176
Hpy8I	GTNNAC	3 cut(s)	448, 633, 673
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	5 cut(s)	61, 65, 154, 190, 220
HpyCH4III	ACNGT	2 cut(s)	332, 509
HpyCH4IV	ACGT	2 cut(s)	212, 489
HpyCH4V	TGCA	4 cut(s)	153, 388, 413, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 709
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	2 cut(s)	212, 489
Hsp92II	CATG	3 cut(s)	527, 630, 688
HspAI	GCGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	1 cut(s)	621
LguI	GCTCTTC	1 cut(s)	710
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	2 cut(s)	243, 661
LweI	GCATC	2 cut(s)	400, 507
MabI	ACCWGGT	1 cut(s)	95
MaeII	ACGT	2 cut(s)	212, 489
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	623
MboI	GATC	1 cut(s)	621
MboII	GAAGA	9 cut(s)	8, 76, 122, 130, 196, 328, 331, 366, 697
MfeI	CAATTG	1 cut(s)	617
MluCI	AATT	4 cut(s)	368, 483, 557, 617
MlyI	GAGTC	3 cut(s)	22, 544, 628
MmeI	TCCRAC	1 cut(s)	491
Mph1103I	ATGCAT	2 cut(s)	155, 415
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	3 cut(s)	57, 85, 97
MunI	CAATTG	1 cut(s)	617
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	85, 97
MwoI	GCNNNNNNNGC	2 cut(s)	467, 709
NciI	CCSGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	1 cut(s)	621
NlaIII	CATG	3 cut(s)	527, 630, 688
NlaIV	GGNNCC	3 cut(s)	101, 180, 329
NmeAIII	GCCGAG	3 cut(s)	240, 334, 628
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	563
NsiI	ATGCAT	2 cut(s)	155, 415
PciSI	GCTCTTC	1 cut(s)	710
PctI	GAATGC	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	82, 258, 460, 651
PleI	GAGTC	3 cut(s)	22, 544, 628
PpsI	GAGTC	3 cut(s)	22, 544, 628
Ppu21I	YACGTR	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	83, 95
PspGI	CCWGG	2 cut(s)	83, 95
PspN4I	GGNNCC	3 cut(s)	101, 180, 329
PspPI	GGNCC	2 cut(s)	99, 328
PspPPI	RGGWCCY	1 cut(s)	99
PsrI	GAACNNNNNNTAC	2 cut(s)	386, 418
PstI	CTGCAG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	710
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	4 cut(s)	81, 257, 459, 650
Sau3AI	GATC	1 cut(s)	621
Sau96I	GGNCC	2 cut(s)	99, 328
SchI	GAGTC	3 cut(s)	22, 544, 628
ScrFI	CCNGG	3 cut(s)	57, 85, 97
SexAI	ACCWGGT	1 cut(s)	95
SfaNI	GCATC	2 cut(s)	400, 507
SfcI	CTRYAG	2 cut(s)	386, 471
SinI	GGWCC	2 cut(s)	99, 328
SnaBI	TACGTA	1 cut(s)	213
Sse9I	AATT	4 cut(s)	368, 483, 557, 617
SsiI	CCGC	3 cut(s)	81, 254, 458
StyD4I	CCNGG	3 cut(s)	55, 83, 95
TaaI	ACNGT	2 cut(s)	332, 509
TaiI	ACGT	2 cut(s)	215, 492
TasI	AATT	4 cut(s)	368, 483, 557, 617
TauI	GCSGC	2 cut(s)	83, 461
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	256, 649
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	6 cut(s)	225, 229, 303, 394, 529, 540
VpaK11BI	GGWCC	2 cut(s)	99, 328
Zsp2I	ATGCAT	2 cut(s)	155, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.