RLG00000029900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014808
Physical Location & Seq
Forward (+)
51036126 .. 51037417
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029900

Sequence Viewer

Length: 438 bp
ATGGAACTGGACGCTGATGGTGTTGGTCTGGTTCATTTTTTTGGTGATGGTAATTATGGCGTTGGTGATGGTAATTATGGCATTGGTGACTCTGCTGTGAAGTTTGACAACTTCCCAAGCAGTAGCTTTTTTGACGACGTGGTTGTGCTGGTGGATTTGCGTGTGCTGGAATTGTGGTATCAGACTGTGGTAGGGGCGCTGGCGGTGATGTTGCTGACGGTGGAGTTTTCCATGTGGGTTAGGGCTTTGTGGGCTAATGGTTACTGGTGGGCCTTGGACTGGCTTGTGGCCCTTAGGTTTGGGTATACTGGTCTAGGTCTAGGGCTGCTATCCTTCCTTCTATTTTCTTCGGCTGGTGTTGGCGATTTTGTGTGCCTGACTATAGTTTGGGTGGAGGACCTAGGGCGCAGTGGCACAAAACCTGGAACATGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.82

Weight (kDa)

4.06

Isoelectric Point (pI)

13.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 305
AciI CCGC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 428
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
AoxI GGCC 2 cut(s) 270, 288
ApeKI GCWGC 1 cut(s) 325
AspA2I CCTAGG 1 cut(s) 400
AspLEI GCGC 2 cut(s) 199, 408
AspS9I GGNCC 3 cut(s) 270, 289, 397
AsuHPI GGTGA 4 cut(s) 56, 77, 98, 217
AvaII GGWCC 1 cut(s) 397
AvrII CCTAGG 1 cut(s) 400
AxyI CCTNAGG 1 cut(s) 293
BbvI GCAGC 1 cut(s) 312
BccI CCATC 3 cut(s) 11, 41, 62
BciT130I CCWGG 1 cut(s) 423
BfaI CTAG 3 cut(s) 314, 320, 401
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 1 cut(s) 326
BlnI CCTAGG 1 cut(s) 400
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 270, 289, 397
BmrFI CCNGG 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 273, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 4 cut(s) 12, 269, 284, 313
Bse21I CCTNAGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 273, 400
BseLI CCNNNNNNNGG 1 cut(s) 279
BseNI ACTGG 4 cut(s) 12, 269, 284, 313
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 2 cut(s) 272, 290
BslI CCNNNNNNNGG 1 cut(s) 279
BsnI GGCC 2 cut(s) 272, 290
BspACI CCGC 1 cut(s) 203
BspANI GGCC 2 cut(s) 272, 290
BsrI ACTGG 4 cut(s) 12, 269, 284, 313
BssECI CCNNGG 2 cut(s) 273, 400
BssNAI GTATAC 1 cut(s) 306
BssT1I CCWWGG 2 cut(s) 273, 400
Bst1107I GTATAC 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 187, 220
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 2 cut(s) 199, 408
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 312
BstZ17I GTATAC 1 cut(s) 306
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 2 cut(s) 272, 290
BtrI CACGTC 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 2 cut(s) 199, 408
Cfr13I GGNCC 3 cut(s) 270, 289, 397
CseI GACGC 1 cut(s) 20
CviAII CATG 2 cut(s) 232, 429
CviJI RGCY 8 cut(s) 126, 245, 254, 272, 283, 290, 325, 353
CviKI_1 RGCY 8 cut(s) 126, 245, 254, 272, 283, 290, 325, 353
DdeI CTNAG 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 273, 400
Eco47I GGWCC 1 cut(s) 397
Eco81I CCTNAGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 273, 400
ErhI CCWWGG 2 cut(s) 273, 400
FaeI CATG 2 cut(s) 235, 432
FaiI YATR 6 cut(s) 57, 78, 233, 306, 383, 430
FatI CATG 2 cut(s) 231, 428
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 3 cut(s) 314, 320, 401
GlaI GCGC 2 cut(s) 198, 407
GluI GCNGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 2 cut(s) 272, 290
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 199, 408
Hin1II CATG 2 cut(s) 235, 432
Hin6I GCGC 2 cut(s) 197, 406
HinP1I GCGC 2 cut(s) 197, 406
HinfI GANTC 1 cut(s) 89
HphI GGTGA 4 cut(s) 56, 77, 98, 217
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 343, 347
HpyCH4III ACNGT 2 cut(s) 187, 220
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 235, 432
HspAI GCGC 2 cut(s) 197, 406
Lsp1109I GCAGC 1 cut(s) 312
MaeI CTAG 3 cut(s) 314, 320, 401
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 86, 260
MboII GAAGA 1 cut(s) 339
MluCI AATT 3 cut(s) 52, 73, 170
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 1 cut(s) 388
MseI TTAA 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 235, 432
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 432
PciI ACATGT 1 cut(s) 428
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 397
PscI ACATGT 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 3 cut(s) 270, 289, 397
PspPPI RGGWCCY 1 cut(s) 397
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 1 cut(s) 326
Sau96I GGNCC 3 cut(s) 270, 289, 397
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 423
SetI ASST 6 cut(s) 128, 141, 299, 319, 402, 424
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 397
Sse9I AATT 3 cut(s) 52, 73, 170
SsiI CCGC 1 cut(s) 203
SspMI CTAG 3 cut(s) 314, 320, 401
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 2 cut(s) 273, 400
TaaI ACNGT 2 cut(s) 187, 220
TaiI ACGT 1 cut(s) 141
TasI AATT 3 cut(s) 52, 73, 170
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 397
XceI RCATGY 1 cut(s) 432
XmaJI CCTAGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 3 cut(s) 314, 320, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.