Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Reverse (-)

44203322 .. 44207316

Gene Structure 3995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGGAATATCAGGGCATATGAAAAGAAAGTAAAGAAAGCCGAGGCGAAGAAGAACAGAGACCGTGCTAATATTCTCCGGCAGAGAAGACCCACTTACAAATTGGATAAAGTCATTTTGCAGAGGTATCCGAAGTTCATTGATGCATTGAGAGATTTGGATGACTGTCTTACAATGGTTCACCTCTTTGCAGCCTTACCTGCTATAGAGGATAGAATTGACATGAAACGCATCCATAACTGTCGGTGGCCGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

85

Amino Acids

10.35

Weight (kDa)

10.32

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	1 - 82	7e-27	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmsI	GCATC	2 cut(s)	133, 240
BpiI	GAAGAC	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	42, 251
BseDI	CCNNGG	2 cut(s)	42, 251
BseGI	GGATG	2 cut(s)	166, 231
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	42, 251
Bst4CI	ACNGT	3 cut(s)	65, 167, 242
BstF5I	GGATG	2 cut(s)	166, 231
BstMAI	GTCTC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	166, 231
BveI	ACCTGC	1 cut(s)	208
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	3 cut(s)	41, 194, 250
CviKI_1	RGCY	3 cut(s)	41, 194, 250
EaeI	YGGCCR	1 cut(s)	248
Eco31I	GGTCTC	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	148
FaeI	CATG	1 cut(s)	226
FaiI	YATR	5 cut(s)	19, 21, 206, 224, 237
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FatI	CATG	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	173, 218
Fsp4HI	GCNGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	226
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4III	ACNGT	3 cut(s)	65, 167, 242
HpyCH4V	TGCA	3 cut(s)	121, 146, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	226
LpnPI	CCDG	2 cut(s)	92, 213
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	2 cut(s)	133, 240
MboII	GAAGA	3 cut(s)	61, 64, 99
MluCI	AATT	2 cut(s)	101, 216
MnlI	CCTC	5 cut(s)	37, 117, 194, 202, 246
Mph1103I	ATGCAT	1 cut(s)	148
MspI	CCGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeI	CATATG	1 cut(s)	19
NlaIII	CATG	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	193
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
SatI	GCNGC	1 cut(s)	192
SetI	ASST	4 cut(s)	128, 186, 202, 257
SfaNI	GCATC	2 cut(s)	133, 240
SfcI	CTRYAG	1 cut(s)	204
SgeI	CNNG	6 cut(s)	25, 55, 77, 91, 212, 235
Sse9I	AATT	2 cut(s)	101, 216
SspI	AATATT	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	65, 167, 242
TasI	AATT	2 cut(s)	101, 216
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	36, 127, 239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.