Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Forward (+)

147684 .. 150319

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003441.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggtgaagaagaagcattacaggcctgccggcaagaaaaaggaaggaaacgccgccaggtcccaagccgtcaagcaactccaagtcaatcttcccctcttcaggaaactatgcattctcaagggtatattccctcgggagccgaagaaaaaggtgaagggaaatcaccatacatattatcacttgaaggatgtttcgttcattcaacacaaaccgctgctcgacaagatgaggaatatcagggcatatgaaaagaaagtaaagaaagccgaggcgaagaagaacagagaccgtgctaatattctcagccagagaagacccacttacaaattagataaagttatattgcagaggtatccgaagttcattgatgcattgagagatttggatgattgtctcacaatggttcacctctttgcggccttacctgctatagaggatagaattgacgtttcaagtttgcctggatccggtaatattgatgagtgcaaattaagacctacccaacttcagcatcagcttccttccaatgaactaggtgcattgatgggccttgttgaatatgttcctggtgaggatgaagaggataatgatacaatgatgtgtaaggaactcttcaaggataagaaattttacttgaaccgtgagatctatctctctcccttcccgattttctcagttttctctgagaatgctttctccctcttgcttcgcgcctcttgtcaccgtcgtcgctcggttctctccggcgtcgccgatctggaacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

256

Amino Acids

29.71

Weight (kDa)

9.73

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	436
AccII	CGCG	1 cut(s)	714
AciI	CCGC	3 cut(s)	54, 215, 419
AclWI	GGATC	2 cut(s)	462, 475
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	2 cut(s)	85, 494
AcyI	GRCGYC	1 cut(s)	750
AfiI	CCNNNNNNNGG	3 cut(s)	102, 418, 470
AgsI	TTSAA	6 cut(s)	187, 206, 456, 560, 619, 640
AjnI	CCWGG	3 cut(s)	56, 463, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	1 cut(s)	520
AluI	AGCT	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	282, 401
AlwI	GGATC	2 cut(s)	462, 475
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	3 cut(s)	23, 420, 550
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	629
Asp700I	GAANNNNTTC	2 cut(s)	564, 695
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	60, 550
AsuHPI	GGTGA	6 cut(s)	16, 158, 166, 401, 584, 716
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	467
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	3 cut(s)	58, 465, 570
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	282, 401
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	648
BisI	GCNGC	3 cut(s)	54, 218, 420
BlsI	GCNGC	3 cut(s)	55, 219, 421
Bme1390I	CCNGG	3 cut(s)	58, 465, 570
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	60, 550
BmiI	GGNNCC	3 cut(s)	62, 141, 469
BmrFI	CCNGG	3 cut(s)	58, 465, 570
BmsI	GCATC	2 cut(s)	361, 523
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	750
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	134, 270
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 418, 470
Bse118I	RCCGGY	1 cut(s)	29
BseBI	CCWGG	3 cut(s)	58, 465, 570
BseDI	CCNNGG	2 cut(s)	134, 270
BseGI	GGATG	3 cut(s)	196, 394, 583
BseLI	CCNNNNNNNGG	3 cut(s)	102, 418, 470
BseMII	CTCAG	3 cut(s)	319, 678, 690
BseXI	GCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	25, 422, 552
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	30, 471, 747
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	3 cut(s)	102, 418, 470
BsmAI	GTCTC	2 cut(s)	282, 401
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	2 cut(s)	114, 697
BsnI	GGCC	3 cut(s)	25, 422, 552
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	467, 648, 757
BspACI	CCGC	3 cut(s)	54, 215, 419
BspANI	GGCC	3 cut(s)	25, 422, 552
BspCNI	CTCAG	3 cut(s)	318, 679, 689
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	3 cut(s)	62, 141, 469
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	462, 475
BspTNI	GGTCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	134, 270
BssMI	GATC	3 cut(s)	467, 648, 757
BssNI	GRCGYC	1 cut(s)	750
Bst2UI	CCWGG	3 cut(s)	58, 465, 570
Bst4CI	ACNGT	3 cut(s)	293, 644, 728
Bst6I	CTCTTC	3 cut(s)	104, 576, 620
BstACI	GRCGYC	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	27, 31
BstDEI	CTNAG	3 cut(s)	305, 676, 687
BstF5I	GGATG	3 cut(s)	196, 394, 583
BstFNI	CGCG	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	3 cut(s)	470, 651, 760
BstMAI	GTCTC	2 cut(s)	282, 401
BstMBI	GATC	3 cut(s)	467, 648, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 428
BstNI	CCWGG	3 cut(s)	58, 465, 570
BstSCI	CCNGG	3 cut(s)	56, 463, 568
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	467, 648
BstYI	RGATCY	2 cut(s)	467, 648
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	25, 422, 552
BtsCI	GGATG	3 cut(s)	196, 394, 583
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	27, 31
CfoI	GCGC	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	60, 550
CseI	GACGC	1 cut(s)	739
CviJI	RGCY	8 cut(s)	25, 68, 142, 269, 309, 422, 520, 552
CviKI_1	RGCY	8 cut(s)	25, 68, 142, 269, 309, 422, 520, 552
DdeI	CTNAG	3 cut(s)	305, 676, 687
DpnI	GATC	3 cut(s)	469, 650, 759
DpnII	GATC	3 cut(s)	467, 648, 757
Eam1104I	CTCTTC	3 cut(s)	104, 576, 620
EarI	CTCTTC	3 cut(s)	104, 576, 620
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	85, 494
Eco88I	CYCGRG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	56, 463, 568
EcoT22I	ATGCAT	2 cut(s)	116, 376
FaiI	YATR	9 cut(s)	112, 128, 171, 175, 247, 249, 344, 434, 564
FalI	AAGNNNNNCTT	6 cut(s)	75, 107, 307, 339, 599, 631
FaqI	GGGAC	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	54, 218, 420
FokI	GGATG	3 cut(s)	203, 401, 590
Fsp4HI	GCNGC	3 cut(s)	54, 218, 420
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	3 cut(s)	54, 218, 420
HaeIII	GGCC	3 cut(s)	25, 422, 552
HapII	CCGG	3 cut(s)	30, 471, 747
HgaI	GACGC	1 cut(s)	739
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	1 cut(s)	750
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HpaII	CCGG	3 cut(s)	30, 471, 747
HphI	GGTGA	6 cut(s)	16, 158, 166, 401, 584, 716
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	360, 688
Hpy188III	TCNNGA	4 cut(s)	103, 137, 667, 761
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	3 cut(s)	732, 735, 755
HpyAV	CCTTC	5 cut(s)	38, 151, 181, 534, 673
HpyCH4III	ACNGT	3 cut(s)	293, 644, 728
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	5 cut(s)	114, 349, 374, 489, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 428
HpyF3I	CTNAG	3 cut(s)	305, 676, 687
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	750
HspAI	GCGC	1 cut(s)	714
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	467, 648, 757
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	2 cut(s)	361, 523
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	3 cut(s)	469, 650, 759
MboI	GATC	3 cut(s)	467, 648, 757
MflI	RGATCY	2 cut(s)	467, 648
MluCI	AATT	4 cut(s)	329, 444, 491, 629
Mph1103I	ATGCAT	2 cut(s)	116, 376
MroNI	GCCGGC	1 cut(s)	29
MroXI	GAANNNNTTC	2 cut(s)	564, 695
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	3 cut(s)	30, 471, 747
MspR9I	CCNGG	3 cut(s)	58, 465, 570
Mva1269I	GAATGC	2 cut(s)	114, 697
MvaI	CCWGG	3 cut(s)	58, 465, 570
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	22, 428
NaeI	GCCGGC	1 cut(s)	31
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	467, 648, 757
NgoMIV	GCCGGC	1 cut(s)	29
NlaIV	GGNNCC	3 cut(s)	62, 141, 469
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	722
NsiI	ATGCAT	2 cut(s)	116, 376
PceI	AGGCCT	1 cut(s)	25
PctI	GAATGC	2 cut(s)	114, 697
PdiI	GCCGGC	1 cut(s)	31
PdmI	GAANNNNTTC	2 cut(s)	564, 695
PkrI	GCNGC	3 cut(s)	55, 219, 421
PpuMI	RGGWCCY	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	56, 463, 568
PspGI	CCWGG	3 cut(s)	56, 463, 568
PspN4I	GGNNCC	3 cut(s)	62, 141, 469
PspPI	GGNCC	2 cut(s)	60, 550
PspPPI	RGGWCCY	1 cut(s)	60
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
PsuI	RGATCY	2 cut(s)	467, 648
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	3 cut(s)	54, 218, 420
Sau3AI	GATC	3 cut(s)	467, 648, 757
Sau96I	GGNCC	2 cut(s)	60, 550
ScrFI	CCNGG	3 cut(s)	58, 465, 570
SetI	ASST	9 cut(s)	62, 156, 356, 414, 430, 453, 502, 522, 541
SfaNI	GCATC	2 cut(s)	361, 523
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	4 cut(s)	329, 444, 491, 629
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	54, 215, 419
SspI	AATATT	2 cut(s)	301, 478
SspMI	CTAG	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	56, 463, 568
TaaI	ACNGT	3 cut(s)	293, 644, 728
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	329, 444, 491, 629
TauI	GCSGC	2 cut(s)	56, 422
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	5 cut(s)	190, 264, 355, 546, 594
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	629
XmnI	GAANNNNTTC	2 cut(s)	564, 695
XspI	CTAG	1 cut(s)	536
Zsp2I	ATGCAT	2 cut(s)	116, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.