Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0016401

Physical Location & Seq

Genomic Coordinates Forward (+)

7222274 .. 7224443

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1053700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAGACTCCAACTATCAAGGATGCTGAAAAGCAAGAAAAAGAGACTGCCAAAAAGAAGACGAGAACACTGGTAAAAAATATTCGAATGAGGGATGATCGTAAACCAAATGTCGATCCACATTATGATTATATCCCCATCCAGAAAAAACAAAAGAAGGCAAAATACATATATGCTGTGAGTGACAGTGAAAGCCCTTCAATTTTGCCGTCAGAAAGCCAACCATTGGATCTAATAATTGAGAAAGGAAAGGAGGAGCCCAAGGTTGAATCACCCTTGAATCCAATTGCTAAAGAAATAGCAAACAAACCTGCAAAGAAGGATGCAAAGAAACCTGTAAAGCGAAAGCTTGACAAACGGTATCATCTACCTGCATCAACAAGGGCGTACAAGTTACTTGCAGATGAGACAAAAGAAAAATTCAAGGAATATTACAGACAAGAGAAAATGGACTACTTCTGGATGCAGCCAAGGCAAGGGTCCATTGTGAATGACCTTGTTGTCCTAAAATCAGATCTGACATCATTGTTTGTGGATGGAGCAATCGATGCCAACATAATTGATGCTTCGTTCTACACAATGGCAGAAAACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.96

Weight (kDa)

9.31

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016401)

Species	Orthologous Gene IDs
malus_domestica	MD05G1170800.v1.1 MD10G1053600.v1.1 MD10G1053700.v1.1 MD11G1281000.v1.1 MD15G1265900.v1.1
pyrus_communis	pycom02g20490 pycom05g15800 pycom14g09120 pycom15g25900 pycom15g25910 pycom15g25920 pycom15g25930 pycom15g31270 pycom16g22770
rosa_multiflora	Rmu_sc0008004.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
Acc36I	ACCTGC	2 cut(s)	319, 379
AccB7I	CCANNNNNTGG	1 cut(s)	226
AclWI	GGATC	2 cut(s)	110, 237
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	226, 476
AgsI	TTSAA	4 cut(s)	201, 269, 280, 424
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	38, 401
AlwI	GGATC	2 cut(s)	110, 237
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	264
AsuII	TTCGAA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	146, 530
BceAI	ACGGC	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	38, 401
BfuAI	ACCTGC	2 cut(s)	319, 379
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	258, 481
BmsI	GCATC	6 cut(s)	13, 313, 383, 453, 538, 553
BpiI	GAAGAC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	85
Bsa29I	ATCGAT	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	261, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 476
Bse1I	ACTGG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	261, 470
BseGI	GGATG	6 cut(s)	28, 100, 138, 328, 468, 541
BseLI	CCNNNNNNNGG	2 cut(s)	226, 476
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	226, 476
BsmAI	GTCTC	2 cut(s)	38, 401
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	97, 115, 229, 514
BspDI	ATCGAT	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	258, 481
BspMI	ACCTGC	2 cut(s)	319, 379
BspPI	GGATC	2 cut(s)	110, 237
BspT104I	TTCGAA	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	261, 470
BssMI	GATC	4 cut(s)	97, 115, 229, 514
BssT1I	CCWWGG	2 cut(s)	261, 470
Bst4CI	ACNGT	2 cut(s)	188, 360
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	85
BstF5I	GGATG	6 cut(s)	28, 100, 138, 328, 468, 541
BstKTI	GATC	4 cut(s)	100, 118, 232, 517
BstMAI	GTCTC	2 cut(s)	38, 401
BstMBI	GATC	4 cut(s)	97, 115, 229, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 548
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	229, 514
BstYI	RGATCY	2 cut(s)	229, 514
Bsu15I	ATCGAT	1 cut(s)	546
BsuTUI	ATCGAT	1 cut(s)	546
BtsCI	GGATG	6 cut(s)	28, 100, 138, 328, 468, 541
BtsIMutI	CAGTG	2 cut(s)	68, 193
BveI	ACCTGC	2 cut(s)	319, 379
Cfr13I	GGNCC	1 cut(s)	480
ClaI	ATCGAT	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	388
CviJI	RGCY	5 cut(s)	195, 219, 259, 349, 469
CviKI_1	RGCY	5 cut(s)	195, 219, 259, 349, 469
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	4 cut(s)	99, 117, 231, 516
DpnII	GATC	4 cut(s)	97, 115, 229, 514
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eco130I	CCWWGG	2 cut(s)	261, 470
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	261, 470
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	261, 470
FaiI	YATR	6 cut(s)	126, 132, 170, 172, 174, 557
Fnu4HI	GCNGC	1 cut(s)	467
FokI	GGATG	6 cut(s)	35, 107, 125, 335, 475, 548
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	467
GluI	GCNGC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	7, 269, 280
HphI	GGTGA	1 cut(s)	264
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	214, 514, 519
Hpy188III	TCNNGA	2 cut(s)	142, 460
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	151, 207, 313
HpyCH4III	ACNGT	2 cut(s)	188, 360
HpyCH4V	TGCA	6 cut(s)	4, 314, 326, 374, 401, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 548
Kzo9I	GATC	4 cut(s)	97, 115, 229, 514
LmnI	GCTCC	2 cut(s)	256, 539
LpnPI	CCDG	6 cut(s)	56, 155, 324, 348, 384, 445
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	6 cut(s)	13, 313, 383, 453, 538, 553
MaeIII	GTNAC	2 cut(s)	182, 393
MalI	GATC	4 cut(s)	99, 117, 231, 516
MboI	GATC	4 cut(s)	97, 115, 229, 514
MboII	GAAGA	1 cut(s)	70
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	2 cut(s)	229, 514
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	5 cut(s)	201, 237, 285, 419, 558
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	84, 247
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	472, 548
NdeII	GATC	4 cut(s)	97, 115, 229, 514
NlaIV	GGNNCC	2 cut(s)	258, 481
NmuCI	GTSAC	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	269, 280
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	258, 481
PspPI	GGNCC	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	229, 514
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	4 cut(s)	97, 115, 229, 514
Sau96I	GGNCC	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	6 cut(s)	267, 313, 337, 351, 373, 498
SfaNI	GCATC	6 cut(s)	13, 313, 383, 453, 538, 553
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	1 cut(s)	480
Sse9I	AATT	5 cut(s)	201, 237, 285, 419, 558
SspI	AATATT	2 cut(s)	82, 431
StyI	CCWWGG	2 cut(s)	261, 470
TaaI	ACNGT	2 cut(s)	188, 360
TaqI	TCGA	3 cut(s)	85, 114, 546
TasI	AATT	5 cut(s)	201, 237, 285, 419, 558
TfiI	GAWTC	2 cut(s)	269, 280
TscAI	CASTG	2 cut(s)	75, 193
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	182
TspRI	CASTG	2 cut(s)	75, 193
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	480
XapI	RAATTY	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.