Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016401

Physical Location & Seq

Genomic Coordinates Forward (+)

29621488 .. 29623579

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGATGATGAAATCGTTGCAACGGAGAGAAAAAAGAAGTTTGATATGGATCTGATCAAGATTATACAATGTTATGACTCCAATGAAGATGTTGCTCAAATATTTGGTTTAAACAACCAAGGAGTTGAACTATCAAACACAGACAAATCCACAAAAAACATGAAGGACAACTTTGTCAAAACATATTTTGCAAACAAAAAAATAGTGAAAAAAAAAAAGGACATTGTTGAAGCGTACCAAAAATCAATCCAAGACAAAACTCCTAAAAGGGCAAAGGCTACTGCTTTAACCATATGTGTGCATCTCCTACAATCCCTCTTATTTGCAATCTTCGGAACATACATCACGTGGAGCTTAGTAACAATTTGTGGGGCATTGGACCAAATCAGCAAATACAACTGGGCAAAAAGAGTGAGGGACTACTTGTTCAAGATGATTAACAAATCAAAGAAAAAGAGGAAAAAAGGAAAAGAATCAGCAACAACAAGCGGATGTACTGCTCTTATTTTGTTTGATCAACTGTACACAGAAGAATTGATGAAATTTGTTGTAATTTATCAAAAGGACATGATAGGGATTGATACCACATTAGGTGTGGAAGGTTTTGAAGAGTTTAAAAGATGTGCGAGCATGGATCAAAAGAGGAATCTAGTCCTCAGTCACATGATGATATATGCACTTGACAACCTACACACAGATTCAATTGTAACGAATCAAACAACAGAAGCACTCAACAGAAACGTTGAAAAGCTTCTCCAAGAACGACATGAAGACAAGCAGAAGATTAGTTCAATGAAATTTGAAATGAAACAGTTGCAATTAAGGAACTCAGCAGCTTCTATGAAAGTAAATAAACTTCTGGATGAAATTGGAAGTTTGAAGGAGAAGCTACTGGAAAAGCAACCAATAATACCAGATCTAAATGCTTCAATAGAGGAAAATCAAAATTTCAAGGATCCAGAAAAGGAGGAACCACCTAAAGAAGATCCAGATAATGATGATAGAATTGAAGAGCATACACATGATAAGGATACTGCTATCGATGATCCAGTTCAAGAGAATGCAACTGAAAATGACGTGGCTATGGAGGATCGATCCCCTGTCCGAGAACAAAGGCATGCAATTGATCATGATCCAGATGAAAATGAGGAGGATCAAGAGCATGAAAGAAAAGACACTGCCACTACAAAAGGGACCTCTGGAGTTCAACAAGATGTTCAAATGCAGAATCCAACTAGTAAGGATCCTCAAGAGCAAGGAAAAGAAACGACCAAGAAGAAGATGAGAACACTAGTAAAAAATATACGGAAGAGGGATGATCGTAAACCAAATGTCGATCCACACTATGATTATATCCCCATCCAAAAAAAACAAAAAAAAAAAAAAGGCCAAATACATCTATGCTGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

471

Amino Acids

54.45

Weight (kDa)

6.86

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016401)

Species	Orthologous Gene IDs
malus_domestica	MD05G1170800.v1.1 MD10G1053600.v1.1 MD10G1053700.v1.1 MD11G1281000.v1.1 MD15G1265900.v1.1
pyrus_communis	pycom02g20490 pycom05g15800 pycom14g09120 pycom15g25900 pycom15g25910 pycom15g25920 pycom15g25930 pycom15g31270 pycom16g22770
rosa_multiflora	Rmu_sc0008004.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AciI	CCGC	1 cut(s)	489
AclI	AACGTT	1 cut(s)	741
AcsI	RAATTY	3 cut(s)	542, 797, 946
AcvI	CACGTG	1 cut(s)	348
AfaI	GTAC	3 cut(s)	236, 496, 524
AhlI	ACTAGT	2 cut(s)	1235, 1291
AjiI	CACGTC	1 cut(s)	1078
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	354, 751, 836, 889
AluI	AGCT	4 cut(s)	354, 751, 836, 889
AoxI	GGCC	1 cut(s)	1387
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	3 cut(s)	542, 797, 946
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	2 cut(s)	379, 1194
AvaII	GGWCC	2 cut(s)	379, 1194
BamHI	GGATCC	2 cut(s)	955, 1243
BarI	GAAGNNNNNNTAC	2 cut(s)	840, 872
BbrPI	CACGTG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	1 cut(s)	1367
BciVI	GTATCC	1 cut(s)	1024
BclI	TGATCA	3 cut(s)	54, 514, 1126
BcuI	ACTAGT	2 cut(s)	1235, 1291
BfaI	CTAG	3 cut(s)	650, 1236, 1292
BfuI	GTATCC	1 cut(s)	1024
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	1 cut(s)	834
BlsI	GCNGC	1 cut(s)	835
Bme18I	GGWCC	2 cut(s)	379, 1194
BmgBI	CACGTC	1 cut(s)	1078
BmgT120I	GGNCC	2 cut(s)	379, 1194
BmiI	GGNNCC	4 cut(s)	957, 972, 1195, 1245
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	1221
BpuEI	CTTGAG	1 cut(s)	1233
Bsa29I	ATCGAT	2 cut(s)	1041, 1093
BsaAI	YACGTR	1 cut(s)	348
BsaBI	GATNNNNATC	2 cut(s)	48, 1131
BsaJI	CCNNGG	1 cut(s)	118
Bse1I	ACTGG	3 cut(s)	404, 897, 1049
Bse8I	GATNNNNATC	2 cut(s)	48, 1131
BseCI	ATCGAT	2 cut(s)	1041, 1093
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	5 cut(s)	10, 497, 868, 1321, 1359
BseJI	GATNNNNATC	2 cut(s)	48, 1131
BseMII	CTCAG	2 cut(s)	670, 843
BseNI	ACTGG	3 cut(s)	404, 897, 1049
BseRI	GAGGAG	1 cut(s)	1163
BseXI	GCAGC	1 cut(s)	845
BshFI	GGCC	1 cut(s)	1389
BshVI	ATCGAT	2 cut(s)	1041, 1093
BslFI	GGGAC	2 cut(s)	431, 1207
BsmFI	GGGAC	2 cut(s)	431, 1207
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	1 cut(s)	1389
Bsp1407I	TGTACA	1 cut(s)	522
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	1 cut(s)	1389
BspCNI	CTCAG	2 cut(s)	669, 842
BspDI	ATCGAT	2 cut(s)	1041, 1093
BspHI	TCATGA	1 cut(s)	1129
BspLI	GGNNCC	4 cut(s)	957, 972, 1195, 1245
BspQI	GCTCTTC	1 cut(s)	1005
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	404, 897, 1049
BssECI	CCNNGG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	522, 813
Bst6I	CTCTTC	3 cut(s)	603, 1005, 1304
BstAUI	TGTACA	1 cut(s)	522
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	628, 1119
BstDEI	CTNAG	3 cut(s)	355, 656, 829
BstF5I	GGATG	5 cut(s)	10, 497, 868, 1321, 1359
BstNSI	RCATGY	1 cut(s)	1121
BstV1I	GCAGC	1 cut(s)	845
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	5 cut(s)	49, 916, 955, 985, 1243
BstYI	RGATCY	5 cut(s)	49, 916, 955, 985, 1243
Bsu15I	ATCGAT	2 cut(s)	1041, 1093
BsuI	GTATCC	1 cut(s)	1024
BsuRI	GGCC	1 cut(s)	1389
BsuTUI	ATCGAT	2 cut(s)	1041, 1093
BtrI	CACGTC	1 cut(s)	1078
BtsCI	GGATG	5 cut(s)	10, 497, 868, 1321, 1359
BtsI	GCAGTG	1 cut(s)	1176
BtsIMutI	CAGTG	1 cut(s)	1176
Cac8I	GCNNGC	2 cut(s)	628, 1119
CciI	TCATGA	1 cut(s)	1129
Cfr13I	GGNCC	2 cut(s)	379, 1194
ClaI	ATCGAT	2 cut(s)	1041, 1093
Csp6I	GTAC	3 cut(s)	235, 495, 523
CviAII	CATG	9 cut(s)	160, 568, 631, 664, 767, 1022, 1118, 1130, 1163
CviJI	RGCY	7 cut(s)	278, 354, 751, 836, 889, 1082, 1389
CviKI_1	RGCY	7 cut(s)	278, 354, 751, 836, 889, 1082, 1389
CviQI	GTAC	3 cut(s)	235, 495, 523
DdeI	CTNAG	3 cut(s)	355, 656, 829
DraI	TTTAAA	2 cut(s)	111, 616
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	3 cut(s)	603, 1005, 1304
EarI	CTCTTC	3 cut(s)	603, 1005, 1304
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	379, 1194
Eco72I	CACGTG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	1194
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	9 cut(s)	163, 571, 634, 667, 770, 1025, 1121, 1133, 1166
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	2 cut(s)	431, 1207
FatI	CATG	9 cut(s)	159, 567, 630, 663, 766, 1021, 1117, 1129, 1162
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	3 cut(s)	54, 514, 1126
Fnu4HI	GCNGC	1 cut(s)	834
FokI	GGATG	5 cut(s)	17, 504, 875, 1328, 1346
Fsp4HI	GCNGC	1 cut(s)	834
FspBI	CTAG	3 cut(s)	650, 1236, 1292
GluI	GCNGC	1 cut(s)	834
GsuI	CTGGAG	1 cut(s)	1221
HaeIII	GGCC	1 cut(s)	1389
Hin1II	CATG	9 cut(s)	163, 571, 634, 667, 770, 1025, 1121, 1133, 1166
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	6 cut(s)	77, 473, 646, 698, 712, 1228
Hpy166II	GTNNAC	2 cut(s)	525, 1325
Hpy188I	TCNGA	3 cut(s)	54, 335, 1106
Hpy8I	GTNNAC	2 cut(s)	525, 1325
HpyAV	CCTTC	3 cut(s)	157, 593, 874
HpyCH4III	ACNGT	2 cut(s)	522, 813
HpyCH4IV	ACGT	3 cut(s)	347, 741, 1077
HpyCH4V	TGCA	9 cut(s)	20, 191, 301, 326, 677, 817, 1064, 1121, 1225
HpyF3I	CTNAG	3 cut(s)	355, 656, 829
HpySE526I	ACGT	3 cut(s)	347, 741, 1077
Hsp92II	CATG	9 cut(s)	163, 571, 634, 667, 770, 1025, 1121, 1133, 1166
Ksp22I	TGATCA	3 cut(s)	54, 514, 1126
LguI	GCTCTTC	1 cut(s)	1005
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	3 cut(s)	650, 1236, 1292
MaeII	ACGT	3 cut(s)	347, 741, 1077
MaeIII	GTNAC	3 cut(s)	358, 659, 706
MfeI	CAATTG	2 cut(s)	702, 1122
MflI	RGATCY	5 cut(s)	49, 916, 955, 985, 1243
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	1256
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	5 cut(s)	110, 287, 438, 615, 821
MslI	CAYNNNNRTG	2 cut(s)	296, 1020
MssI	GTTTAAAC	1 cut(s)	111
MunI	CAATTG	2 cut(s)	702, 1122
Mva1269I	GAATGC	1 cut(s)	1066
NdeI	CATATG	1 cut(s)	293
NlaIII	CATG	9 cut(s)	163, 571, 634, 667, 770, 1025, 1121, 1133, 1166
NlaIV	GGNNCC	4 cut(s)	957, 972, 1195, 1245
NmuCI	GTSAC	1 cut(s)	659
NspI	RCATGY	1 cut(s)	1121
PaeI	GCATGC	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	1129
PciSI	GCTCTTC	1 cut(s)	1005
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	5 cut(s)	473, 646, 698, 712, 1228
PkrI	GCNGC	1 cut(s)	835
PleI	GAGTC	1 cut(s)	71
PmaCI	CACGTG	1 cut(s)	348
PmeI	GTTTAAAC	1 cut(s)	111
PmlI	CACGTG	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	348
PpuMI	RGGWCCY	1 cut(s)	1194
Psp1406I	AACGTT	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	1194
PspCI	CACGTG	1 cut(s)	348
PspN4I	GGNNCC	4 cut(s)	957, 972, 1195, 1245
PspPI	GGNCC	2 cut(s)	379, 1194
PspPPI	RGGWCCY	1 cut(s)	1194
PsuI	RGATCY	5 cut(s)	49, 916, 955, 985, 1243
RsaI	GTAC	3 cut(s)	236, 496, 524
RsaNI	GTAC	3 cut(s)	235, 495, 523
RseI	CAYNNNNRTG	2 cut(s)	296, 1020
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	5 cut(s)	110, 287, 438, 615, 821
SatI	GCNGC	1 cut(s)	834
Sau96I	GGNCC	2 cut(s)	379, 1194
SchI	GAGTC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	2 cut(s)	379, 1194
SmiMI	CAYNNNNRTG	2 cut(s)	296, 1020
SmlI	CTYRAG	1 cut(s)	1248
SmoI	CTYRAG	1 cut(s)	1248
SpeI	ACTAGT	2 cut(s)	1235, 1291
SphI	GCATGC	1 cut(s)	1121
SsiI	CCGC	1 cut(s)	489
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	3 cut(s)	650, 1236, 1292
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	522, 813
TaiI	ACGT	3 cut(s)	350, 744, 1080
TaqI	TCGA	3 cut(s)	1041, 1093, 1335
TatI	WGTACW	2 cut(s)	494, 522
TfiI	GAWTC	5 cut(s)	473, 646, 698, 712, 1228
Tru1I	TTAA	5 cut(s)	110, 287, 438, 615, 821
Tru9I	TTAA	5 cut(s)	110, 287, 438, 615, 821
TscAI	CASTG	1 cut(s)	1183
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	659
TspGWI	ACGGA	2 cut(s)	38, 1321
TspRI	CASTG	1 cut(s)	1183
VpaK11BI	GGWCC	2 cut(s)	379, 1194
XapI	RAATTY	3 cut(s)	542, 797, 946
XceI	RCATGY	1 cut(s)	1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	3 cut(s)	650, 1236, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.