pycom15g25930

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
20566939 .. 20567304
366 bp
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UTR
Exon/CDS
Intron
pycom15g25930.1

Sequence Viewer

Length: 366 bp
ATGTGCCTTATTATGGTTCGAATCCAAAAACAGTTTGATTTGTGTAAAAACTTGACCGTTGACTATCTGTTTTCTTCAATCCATGTTCTGCTTGTTCTTCTTAAACAGTTAATTATAATTCCTAAGCTCTGTTCATTTTTACAAATACTGGTAACCAAGAAAATCAGAAGGAAGACTTTTGCAAAGAAACCAACAATGGAGAAGAAGAAAAGATACCATTGTATATATCTCCAATATCGGTGCAATGTGAACGAGTTTTCAAACTCAATGGAAATTTACAAGCCAATGCTTGAAGACCGCAAAGATGTTTACGAACAGTTAGAAAAGACACCGTTCTGTTGTAACCAAAAGGAAGAAGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.63

Weight (kDa)

9.27

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AciI CCGC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 13
AgsI TTSAA 3 cut(s) 78, 261, 293
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
ApoI RAATTY 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 19
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbsI GAAGAC 2 cut(s) 179, 300
BpiI GAAGAC 2 cut(s) 179, 300
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 19
BspACI CCGC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 1 cut(s) 153
Bst4CI ACNGT 5 cut(s) 33, 58, 108, 318, 333
BstBI TTCGAA 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 151
BstV2I GAAGAC 2 cut(s) 179, 300
CviAII CATG 1 cut(s) 83
CviJI RGCY 2 cut(s) 127, 283
CviKI_1 RGCY 2 cut(s) 127, 283
DdeI CTNAG 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 14, 84, 116, 224, 226
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FatI CATG 1 cut(s) 82
Hin1II CATG 1 cut(s) 86
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 21
Hpy166II GTNNAC 3 cut(s) 61, 250, 310
Hpy188I TCNGA 1 cut(s) 167
Hpy8I GTNNAC 3 cut(s) 61, 250, 310
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 5 cut(s) 33, 58, 108, 318, 333
HpyCH4V TGCA 2 cut(s) 182, 243
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 86
LpnPI CCDG 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 151, 341
MboII GAAGA 7 cut(s) 66, 89, 184, 214, 217, 305, 365
MluCI AATT 3 cut(s) 111, 117, 273
MseI TTAA 2 cut(s) 102, 110
NlaIII CATG 1 cut(s) 86
NspV TTCGAA 1 cut(s) 19
PfeI GAWTC 1 cut(s) 21
PsiI TTATAA 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 102, 110
SetI ASST 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 19
SgeI CNNG 8 cut(s) 64, 95, 104, 161, 169, 265, 292, 302
Sse9I AATT 3 cut(s) 111, 117, 273
SsiI CCGC 1 cut(s) 298
TaaI ACNGT 5 cut(s) 33, 58, 108, 318, 333
TaqI TCGA 1 cut(s) 19
TasI AATT 3 cut(s) 111, 117, 273
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 102, 110
Tru9I TTAA 2 cut(s) 102, 110
TspDTI ATGAA 1 cut(s) 123
XapI RAATTY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.