Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016401

Physical Location & Seq

Genomic Coordinates Reverse (-)

22809701 .. 22826062

Gene Structure 16362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1265900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGATGATGAAATCGTTGCAACGGAAAGAAAAAAGAAGTCTGATATGGATTTGATCAAGATTATACAATGCTATGACTCCAAGCAACAAAAGTTCAAATTTGGAGATTATGAGCCAAAAGCAATAACAAGTGAAGACGTTGTTGAAATATTTGGATTGAACAACCAAGGGGTTGAACTACCAAACACAGACAAATTCACAAAGAACATGAAGGACAACTTTGTCAAAACATATTTCGTGAACCAAAAAATAGTGAAAAAAGGACATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

91

Amino Acids

10.48

Weight (kDa)

7.78

Isoelectric Point (pI)

19.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016401)

Species	Orthologous Gene IDs
malus_domestica	MD05G1170800.v1.1 MD10G1053600.v1.1 MD10G1053700.v1.1 MD11G1281000.v1.1 MD15G1265900.v1.1
pyrus_communis	pycom02g20490 pycom05g15800 pycom14g09120 pycom15g25900 pycom15g25910 pycom15g25920 pycom15g25930 pycom15g31270 pycom16g22770
rosa_multiflora	Rmu_sc0008004.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	98, 194
AgsI	TTSAA	4 cut(s)	97, 146, 160, 176
ApoI	RAATTY	2 cut(s)	98, 194
BbsI	GAAGAC	1 cut(s)	141
BclI	TGATCA	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	10
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	1 cut(s)	115
CviKI_1	RGCY	1 cut(s)	115
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	211
FaiI	YATR	6 cut(s)	47, 65, 75, 111, 209, 232
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	54
FokI	GGATG	1 cut(s)	17
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	3 cut(s)	58, 238, 270
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	54
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	146
MluCI	AATT	2 cut(s)	98, 194
MlyI	GAGTC	1 cut(s)	71
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	71
SetI	ASST	1 cut(s)	141
SgeI	CNNG	6 cut(s)	70, 94, 141, 179, 220, 250
Sse9I	AATT	2 cut(s)	98, 194
SspI	AATATT	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	141
TasI	AATT	2 cut(s)	98, 194
TspDTI	ATGAA	2 cut(s)	24, 224
TspGWI	ACGGA	1 cut(s)	38
XapI	RAATTY	2 cut(s)	98, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.