Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016401

Physical Location & Seq

Genomic Coordinates Forward (+)

39850732 .. 39854617

Gene Structure 3886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1281000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGTAAAAAATATTCGAAAGAGGGATGATTGTAAACCAAATGTCGATCCACAGTATGATTATATCCCAATCCAAAGAAAACAAAAGAAGGCAAATTACATATATGTTGTGAGTGACAGTGAAAGCCTTTCAATTGTTCCGTTAGAAAGCCAATCGTTGGAACCAATAATTGAGAAAGGAAAGGAGGAGCCAAAGGTTGAATCACCATTGAATCCAATTGCTAAAGAAATAGCAAACAAACTTGCAAAGAAGGCTACAAAGCAAAAGCTTAACAAACGGTATCATCTACCTACATCAACAAGGGTGTACAAGTTACTTGAAGATGAGACAAAAGAAAAATTCAAGGAATATTACATACAAGAGAAAATAGATTACTTCTGGATGCAACCAAGGCAAGGATCCATGGCGACTGAGCTTGTTGTCCTAAAAACAGATATGACGTCATTGTTTGTGGATGGAGCAATCGACGCCAACATAATTGATGCTTCGTTATACACAATGGCAGAAAACAAATCAAAAATAGGGCAACAACAAAATCTGTATCTTCCTTCATTCATCTTTAATGATATGGAGATTGAAAAAAGCAAGAGTGATCAAAAGCACATTGACCAAACATTGAAGACAGTTTTACAAGATAATGTGGATAAAGTCGAAAATGTCTTCATACTAATCAAGCATTACTTCCACTTCGGCTTGGTAGTTTGGGACATTAAAAATGGAAAAATGACACACTACAATTTCAAACTACCGAGGGTACATGGGCATACAGACCAATACTTTGATCATGCTGTAGACAAAATAGAAGCATTTTACAAAGATTTCAAAGGAGACAACAACCTCACAATAGATATTCAAAGATGCTTAACTTGCGCACAACAAAAGGATGACTCATTGGATTGTGGCATATTTGTCATTCAATTTGCAAACCAAGTGCAAGAGGGCAAACCAATAGAAGCCACATTTGAGAAGGAAGAAGTATTTGCCAAAAGAGCTCAAATTGTAACTACACTTGTGAATCATGAGAATAGTTATGCAAATGGACTGAAGAAGATACTTGAAGACAGAAGACGACAAAATAAACATCGTCAATATGATGACATTCCTGATGAGGATTTTACTACATTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

43.9

Weight (kDa)

6.58

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016401)

Species	Orthologous Gene IDs
malus_domestica	MD05G1170800.v1.1 MD10G1053600.v1.1 MD10G1053700.v1.1 MD11G1281000.v1.1 MD15G1265900.v1.1
pyrus_communis	pycom02g20490 pycom05g15800 pycom14g09120 pycom15g25900 pycom15g25910 pycom15g25920 pycom15g25930 pycom15g31270 pycom16g22770
rosa_multiflora	Rmu_sc0008004.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
Acc16I	TGCGCA	1 cut(s)	871
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	792
AclWI	GGATC	3 cut(s)	41, 393, 406
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	1064
AcyI	GRCGYC	2 cut(s)	440, 468
AfaI	GTAC	2 cut(s)	308, 756
AfiI	CCNNNNNNNGG	2 cut(s)	157, 395
AluBI	AGCT	3 cut(s)	268, 415, 992
AluI	AGCT	3 cut(s)	268, 415, 992
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	2 cut(s)	320, 822
AlwI	GGATC	3 cut(s)	41, 393, 406
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
AspLEI	GCGC	1 cut(s)	872
AsuHPI	GGTGA	1 cut(s)	195
AsuII	TTCGAA	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	994
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	4 cut(s)	626, 652, 1065, 1072
Bbv12I	GWGCWC	1 cut(s)	994
BccI	CCATC	1 cut(s)	449
BclI	TGATCA	2 cut(s)	592, 781
BcoDI	GTCTC	2 cut(s)	320, 822
BfmI	CTRYAG	1 cut(s)	789
BmiI	GGNNCC	3 cut(s)	162, 189, 400
BmsI	GCATC	3 cut(s)	372, 472, 848
BpiI	GAAGAC	4 cut(s)	626, 652, 1065, 1072
Bpu14I	TTCGAA	1 cut(s)	16
BsaHI	GRCGYC	2 cut(s)	440, 468
BsaJI	CCNNGG	3 cut(s)	389, 402, 749
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 395
BseDI	CCNNGG	3 cut(s)	389, 402, 749
BseGI	GGATG	4 cut(s)	31, 387, 460, 889
BseLI	CCNNNNNNNGG	2 cut(s)	157, 395
BseMII	CTCAG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	994
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	2 cut(s)	157, 395
BsmAI	GTCTC	2 cut(s)	320, 822
BsmFI	GGGAC	1 cut(s)	719
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	46, 398, 592, 781
Bsp19I	CCATGG	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	1018
BspLI	GGNNCC	3 cut(s)	162, 189, 400
BspPI	GGATC	3 cut(s)	41, 393, 406
BspT104I	TTCGAA	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	389, 402, 749
BssMI	GATC	4 cut(s)	46, 398, 592, 781
BssNI	GRCGYC	2 cut(s)	440, 468
BssT1I	CCWWGG	2 cut(s)	389, 402
Bst4CI	ACNGT	4 cut(s)	54, 119, 279, 625
BstACI	GRCGYC	2 cut(s)	440, 468
BstAUI	TGTACA	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	4 cut(s)	31, 387, 460, 889
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	4 cut(s)	49, 401, 595, 784
BstMAI	GTCTC	2 cut(s)	320, 822
BstMBI	GATC	4 cut(s)	46, 398, 592, 781
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 391, 467, 867, 989
BstSFI	CTRYAG	1 cut(s)	789
BstV2I	GAAGAC	4 cut(s)	626, 652, 1065, 1072
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	4 cut(s)	31, 387, 460, 889
BtsIMutI	CAGTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	1018
CfoI	GCGC	1 cut(s)	872
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	307, 755
CviAII	CATG	5 cut(s)	403, 758, 785, 1019, 1128
CviJI	RGCY	9 cut(s)	126, 150, 190, 254, 268, 415, 693, 956, 992
CviKI_1	RGCY	9 cut(s)	126, 150, 190, 254, 268, 415, 693, 956, 992
CviQI	GTAC	2 cut(s)	307, 755
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	4 cut(s)	48, 400, 594, 783
DpnII	GATC	4 cut(s)	46, 398, 592, 781
Ecl136II	GAGCTC	1 cut(s)	992
Eco130I	CCWWGG	2 cut(s)	389, 402
Eco24I	GRGCYC	1 cut(s)	994
Eco53kI	GAGCTC	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	1064
EcoICRI	GAGCTC	1 cut(s)	992
EcoT14I	CCWWGG	2 cut(s)	389, 402
EcoT38I	GRGCYC	1 cut(s)	994
ErhI	CCWWGG	2 cut(s)	389, 402
FaeI	CATG	5 cut(s)	406, 761, 788, 1022, 1131
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	5 cut(s)	402, 757, 784, 1018, 1127
FbaI	TGATCA	2 cut(s)	592, 781
FblI	GTMKAC	1 cut(s)	792
FokI	GGATG	4 cut(s)	38, 394, 467, 896
FriOI	GRGCYC	1 cut(s)	994
FspI	TGCGCA	1 cut(s)	871
GlaI	GCGC	1 cut(s)	871
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	872
Hin1I	GRCGYC	2 cut(s)	440, 468
Hin1II	CATG	5 cut(s)	406, 761, 788, 1022, 1131
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	200, 211, 887, 1015
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	35, 307, 793
Hpy188III	TCNNGA	3 cut(s)	379, 1019, 1103
Hpy8I	GTNNAC	3 cut(s)	35, 307, 793
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	82, 244, 558, 961
HpyCH4III	ACNGT	4 cut(s)	54, 119, 279, 625
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	245, 385, 923, 934, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 391, 467, 867, 989
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	2 cut(s)	440, 468
Hsp92II	CATG	5 cut(s)	406, 761, 788, 1022, 1131
HspAI	GCGC	1 cut(s)	870
Ksp22I	TGATCA	2 cut(s)	592, 781
Kzo9I	GATC	4 cut(s)	46, 398, 592, 781
LmnI	GCTCC	2 cut(s)	187, 458
LpnPI	CCDG	2 cut(s)	364, 1116
LweI	GCATC	3 cut(s)	372, 472, 848
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	3 cut(s)	113, 312, 1000
MalI	GATC	4 cut(s)	48, 400, 594, 783
MboI	GATC	4 cut(s)	46, 398, 592, 781
MboII	GAAGA	9 cut(s)	332, 536, 631, 652, 983, 1057, 1060, 1070, 1077
MfeI	CAATTG	2 cut(s)	132, 216
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	994
MluCI	AATT	9 cut(s)	94, 132, 168, 216, 338, 477, 736, 917, 996
MlyI	GAGTC	1 cut(s)	881
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	15, 178, 744, 848, 931, 1102
MseI	TTAA	4 cut(s)	270, 561, 711, 863
MslI	CAYNNNNRTG	1 cut(s)	1126
MunI	CAATTG	2 cut(s)	132, 216
MwoI	GCNNNNNNNGC	5 cut(s)	251, 391, 467, 867, 989
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	46, 398, 592, 781
NlaIII	CATG	5 cut(s)	406, 761, 788, 1022, 1131
NlaIV	GGNNCC	3 cut(s)	162, 189, 400
NmuCI	GTSAC	1 cut(s)	113
NsbI	TGCGCA	1 cut(s)	871
NspV	TTCGAA	1 cut(s)	16
PagI	TCATGA	1 cut(s)	1018
PfeI	GAWTC	3 cut(s)	200, 211, 1015
PflMI	CCANNNNNTGG	1 cut(s)	157
PleI	GAGTC	1 cut(s)	881
PpsI	GAGTC	1 cut(s)	881
Psp124BI	GAGCTC	1 cut(s)	994
PspN4I	GGNNCC	3 cut(s)	162, 189, 400
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	308, 756
RsaNI	GTAC	2 cut(s)	307, 755
RseI	CAYNNNNRTG	1 cut(s)	1126
SacI	GAGCTC	1 cut(s)	994
SaqAI	TTAA	4 cut(s)	270, 561, 711, 863
Sau3AI	GATC	4 cut(s)	46, 398, 592, 781
SchI	GAGTC	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	994
SetI	ASST	7 cut(s)	198, 270, 292, 417, 443, 840, 994
SfaNI	GCATC	3 cut(s)	372, 472, 848
SfcI	CTRYAG	1 cut(s)	789
SfuI	TTCGAA	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	1126
Sse9I	AATT	9 cut(s)	94, 132, 168, 216, 338, 477, 736, 917, 996
SspI	AATATT	2 cut(s)	13, 350
SstI	GAGCTC	1 cut(s)	994
StyI	CCWWGG	2 cut(s)	389, 402
TaaI	ACNGT	4 cut(s)	54, 119, 279, 625
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	4 cut(s)	16, 45, 465, 651
TasI	AATT	9 cut(s)	94, 132, 168, 216, 338, 477, 736, 917, 996
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	3 cut(s)	200, 211, 1015
Tru1I	TTAA	4 cut(s)	270, 561, 711, 863
Tru9I	TTAA	4 cut(s)	270, 561, 711, 863
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	540, 544, 652
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	792
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.