Rmu_sc0008004.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008004.1
OG0016401
Physical Location & Seq
Reverse (-)
48735 .. 49331
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008004.1_g000009.1.cds

Sequence Viewer

Length: 399 bp
atgtacatgttggagcactttactctcctggtattcgatgtggaaaagaaagagtggacacattacaattcactgaggcaagagctggatcagtttgaagtttgttctcactttggtcatgctaaagtacttaaagacaagatggaagattggatgaagcaaaaccgaagggagaagatgtttaaaggatggaagaaatttaagtttccaatcaagagtgatgtaaaatgtgcacggcaactggatagcatgagttgtggcatctcaattgtctattatgttgaccaactcatcaacaacaagccgattgcagagcactgggaagtgagtgacatgttcagatatagagcaactatgatgacaaacttagtggagatgtatagcaagagtaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

16.08

Weight (kDa)

9.07

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 2 cut(s) 5, 129
AflIII ACRYGT 2 cut(s) 6, 333
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw21I GWGCWC 3 cut(s) 18, 235, 318
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 235
Bbv12I GWGCWC 3 cut(s) 18, 235, 318
BccI CCATC 2 cut(s) 136, 183
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bse1I ACTGG 2 cut(s) 246, 323
BseBI CCWGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 159, 194
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 2 cut(s) 246, 323
BseSI GKGCMC 1 cut(s) 235
BsiHKAI GWGCWC 3 cut(s) 18, 235, 318
Bsp1286I GDGCHC 3 cut(s) 18, 235, 318
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 246, 323
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 74, 367
BstF5I GGATG 2 cut(s) 159, 194
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 2 cut(s) 10, 337
BstSCI CCNGG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 159, 194
BtsIMutI CAGTG 2 cut(s) 71, 316
Csp6I GTAC 2 cut(s) 4, 128
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 4 cut(s) 7, 119, 250, 334
CviJI RGCY 2 cut(s) 85, 304
CviKI_1 RGCY 2 cut(s) 85, 304
CviQI GTAC 2 cut(s) 4, 128
DdeI CTNAG 2 cut(s) 74, 367
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 4 cut(s) 10, 122, 253, 337
FaiI YATR 8 cut(s) 8, 120, 251, 279, 335, 345, 356, 381
FatI CATG 4 cut(s) 6, 118, 249, 333
FokI GGATG 2 cut(s) 166, 201
Hin1II CATG 4 cut(s) 10, 122, 253, 337
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
Hpy166II GTNNAC 3 cut(s) 57, 233, 283
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 3 cut(s) 57, 233, 283
HpyAV CCTTC 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 233, 311
HpyF3I CTNAG 2 cut(s) 74, 367
Hsp92II CATG 4 cut(s) 10, 122, 253, 337
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 14, 41, 71, 227, 304
LweI GCATC 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 329
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 158, 187, 205
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 3 cut(s) 18, 235, 318
MluCI AATT 3 cut(s) 67, 197, 267
MnlI CCTC 1 cut(s) 69
MseI TTAA 3 cut(s) 132, 183, 201
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 29
NdeII GATC 1 cut(s) 88
NlaIII CATG 4 cut(s) 10, 122, 253, 337
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 2 cut(s) 10, 337
PciI ACATGT 2 cut(s) 6, 333
PscI ACATGT 2 cut(s) 6, 333
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
RsaI GTAC 2 cut(s) 5, 129
RsaNI GTAC 2 cut(s) 4, 128
SaqAI TTAA 3 cut(s) 132, 183, 201
Sau3AI GATC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 3 cut(s) 18, 235, 318
SetI ASST 1 cut(s) 87
SfaNI GCATC 1 cut(s) 270
Sse9I AATT 3 cut(s) 67, 197, 267
StyD4I CCNGG 1 cut(s) 27
TaqI TCGA 1 cut(s) 36
TasI AATT 3 cut(s) 67, 197, 267
TatI WGTACW 2 cut(s) 3, 127
Tru1I TTAA 3 cut(s) 132, 183, 201
Tru9I TTAA 3 cut(s) 132, 183, 201
TscAI CASTG 2 cut(s) 78, 323
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 2 cut(s) 78, 323
VneI GTGCAC 1 cut(s) 231
XapI RAATTY 1 cut(s) 197
XceI RCATGY 2 cut(s) 10, 337
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.