Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003352

Physical Location & Seq

Genomic Coordinates Forward (+)

41007087 .. 41009199

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1332900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTGGATGCACAACTTGGCAACTGCGGTGATGATGATGCCCGTAGCCACCAGCATTCTCCGGCGGTTTCCGACGGGTCCCGACCAGTCCGTGGTTGTGAGCAACTTTTGCAAAGCCGTGATTCTGGGGGTGTTGTACTCCATAACCATAGGAGGGATGAGCACTCTAACGGGGACCGATGTCAATCTCATATTGGTTGGAATGTGGAAGACCTATTTCCCACAAGCAGCTCCGATCACCTTCAGCACTTGGTTCTGTTTCGCCTTCCCTTTGGCATTGTTGATGTTCTTGGCTTTGCGGGGTTTGCTTTGCTGCTTGTATTGCTCAAGGAGTTCAGGCCAGGCTCTCTCTGTTTATTTAGACAAAGCCCATTTGAAGGAGGAGCTCGAATTGCTAGGTCCAATGGATTTTGCTGAGAAGATGGTACTGGCTTTGTTTTCGATGCTGATTGTTTTGTGGATGACAAGAAGCATAACGGAGGATATTCCGGGCTGGGGAGTCCTCTTCAACGGGCATGCCGGAGATGGAACTGTCAGTGTTATGATTGCAACTTTTTTGTTCACAATTCCAAGCAAAAAGCAAAAAGGTGAGAAGTTGATGGACTGGGAAAAATGTGAGAAGCTACCCTGGAATATCATATTGTTACTAGGTGCTGGTTTAGCCATAACTGACGGAGTTCGATCCAGTGGCCTTGCTAATATATTACCTGAAACCCTAGATTTTTTGGAGGCAGTCCCATATGTTGCCCTTGCACCTGCTGTGTGTCTCATAAGTAGTTCCATCACTGAGTTGATCATATCAAACAATGCAACAACCACGCTTATTATTCCTCTCCTAATTCAAATTGCCAAACGAATGCATGTGCATCCTCTCCTTCTGATGATTCCGGGTGGCATTGGGGCACAATTTGCTTTCTTGCTTCCTACGGCAACTCCTTCAAATACTGTAGGATTAGCCACTGGCCACATTGAGATCCAAGATATGATCAAGATTGGCTTGCCATTGAAGATTGTTGGGATTGCTGTGTTGTCCCTTTTGATGCCCACTCTTGGAGCTTTTGTATTTAGGACAAGTGAACCAGTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

363

Amino Acids

39.3

Weight (kDa)

6.99

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	1 - 294	3.8e-24	Citrate transporter
Na_sulph_symp	PF00939	8 - 348	1.1e-38	Sodium:sulfate symporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47560
fragaria_vesca	FvH4_3g00890 FvH4_3g00891 FvH4_3g00891
malus_domestica	MD05G1358600.v1.1 MD10G1332900.v1.1 MD10G1333000.v1.1
prunus_persica	Prupe.4G009400_v2.0.a1 Prupe.4G009500_v2.0.a1 Prupe.4G009500_v2.0.a1
pyrus_communis	pycom05g32430 pycom10g28220 pycom10g28230 pycom10g28300 pycom10g28330
rosa_chinensis	RchiOBHm_Chr5g0001361 RchiOBHm_Chr5g0001371
rosa_laevigata	RLG00000030922 RLG00000030923
rosa_multiflora	Rmu_co8451069.1_g000001 Rmu_sc0001706.1_g000004 Rmu_sc0003749.1_g000019 Rmu_sc0003900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00074990
rosa_rugosa	Rorug04G0390100.1 Rorug04G0390200
rosa_samantha	Rh5AG010400 Rh5AG010500 Rh5BG013100 Rh5BG013300 Rh5CG011400 Rh5CG011500 Rh5DG010800 Rh5DG010900
rosa_wichuraiana	Rw5G001000 Rw5G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	763
AccB7I	CCANNNNNTGG	1 cut(s)	91
AciI	CCGC	3 cut(s)	26, 64, 298
AclWI	GGATC	2 cut(s)	675, 967
AcoI	YGGCCR	1 cut(s)	961
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	137, 426
AfiI	CCNNNNNNNGG	5 cut(s)	91, 153, 376, 494, 1049
AgsI	TTSAA	5 cut(s)	376, 508, 842, 939, 1006
AjnI	CCWGG	2 cut(s)	339, 626
AluBI	AGCT	4 cut(s)	230, 385, 622, 1055
AluI	AGCT	4 cut(s)	230, 385, 622, 1055
Alw21I	GWGCWC	2 cut(s)	164, 387
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	675, 967
AoxI	GGCC	3 cut(s)	337, 688, 961
ApeKI	GCWGC	2 cut(s)	227, 312
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspS9I	GGNCC	3 cut(s)	77, 174, 398
AsuC2I	CCSGG	2 cut(s)	489, 888
AsuHPI	GGTGA	3 cut(s)	40, 229, 599
AvaII	GGWCC	3 cut(s)	77, 174, 398
BaeGI	GKGCMC	1 cut(s)	904
BalI	TGGCCA	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	164, 387
BbvI	GCAGC	2 cut(s)	239, 299
BccI	CCATC	4 cut(s)	415, 518, 592, 788
BceAI	ACGGC	2 cut(s)	101, 942
BciT130I	CCWGG	2 cut(s)	341, 628
BclI	TGATCA	2 cut(s)	792, 984
BcnI	CCSGG	2 cut(s)	489, 888
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	3 cut(s)	395, 647, 716
BfmI	CTRYAG	1 cut(s)	945
BfuAI	ACCTGC	1 cut(s)	763
BisI	GCNGC	2 cut(s)	228, 313
BlsI	GCNGC	2 cut(s)	229, 314
Bme1390I	CCNGG	4 cut(s)	341, 489, 628, 888
Bme18I	GGWCC	3 cut(s)	77, 174, 398
BmgT120I	GGNCC	3 cut(s)	77, 174, 398
BmiI	GGNNCC	3 cut(s)	78, 79, 175
BmrFI	CCNGG	4 cut(s)	341, 489, 628, 888
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	4 cut(s)	27, 432, 874, 1029
BmuI	ACTGGG	1 cut(s)	613
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	489, 888
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	90, 626
BsaXI	ACNNNNNCTCC	4 cut(s)	916, 946, 1044, 1074
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 153, 376, 494, 1049
Bse1I	ACTGG	6 cut(s)	85, 432, 608, 684, 964, 1079
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	341, 628
BseDI	CCNNGG	2 cut(s)	90, 626
BseGI	GGATG	4 cut(s)	12, 162, 465, 865
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	5 cut(s)	91, 153, 376, 494, 1049
BseMII	CTCAG	2 cut(s)	405, 777
BseNI	ACTGG	6 cut(s)	85, 432, 608, 684, 964, 1079
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	2 cut(s)	239, 299
BseYI	CCCAGC	1 cut(s)	492
BshFI	GGCC	3 cut(s)	339, 690, 963
BsiHKAI	GWGCWC	2 cut(s)	164, 387
BsiSI	CCGG	4 cut(s)	61, 488, 519, 887
BslFI	GGGAC	4 cut(s)	63, 187, 719, 1015
BslI	CCNNNNNNNGG	5 cut(s)	91, 153, 376, 494, 1049
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	4 cut(s)	63, 187, 719, 1015
BsmI	GAATGC	2 cut(s)	54, 861
BsnI	GGCC	3 cut(s)	339, 690, 963
Bsp1286I	GDGCHC	3 cut(s)	164, 387, 904
Bsp143I	GATC	5 cut(s)	234, 680, 792, 972, 984
BspACI	CCGC	3 cut(s)	26, 64, 298
BspANI	GGCC	3 cut(s)	339, 690, 963
BspCNI	CTCAG	2 cut(s)	406, 778
BspLI	GGNNCC	3 cut(s)	78, 79, 175
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	2 cut(s)	675, 967
BsrI	ACTGG	6 cut(s)	85, 432, 608, 684, 964, 1079
BssECI	CCNNGG	2 cut(s)	90, 626
BssMI	GATC	5 cut(s)	234, 680, 792, 972, 984
Bst2UI	CCWGG	2 cut(s)	341, 628
Bst4CI	ACNGT	2 cut(s)	532, 946
Bst6I	CTCTTC	1 cut(s)	509
BstAPI	GCANNNNNTGC	2 cut(s)	108, 908
BstC8I	GCNNGC	2 cut(s)	516, 998
BstDEI	CTNAG	2 cut(s)	414, 786
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	4 cut(s)	12, 162, 465, 865
BstKTI	GATC	5 cut(s)	237, 683, 795, 975, 987
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	5 cut(s)	234, 680, 792, 972, 984
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 304, 321, 391, 659, 908
BstNI	CCWGG	2 cut(s)	341, 628
BstNSI	RCATGY	2 cut(s)	518, 863
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	339, 487, 626, 886
BstSFI	CTRYAG	1 cut(s)	945
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	2 cut(s)	239, 299
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	972
BstYI	RGATCY	1 cut(s)	972
BsuRI	GGCC	3 cut(s)	339, 690, 963
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	4 cut(s)	12, 162, 465, 865
BtsIMutI	CAGTG	4 cut(s)	541, 691, 783, 957
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	2 cut(s)	516, 998
Cfr13I	GGNCC	3 cut(s)	77, 174, 398
Csp6I	GTAC	2 cut(s)	136, 425
CviAII	CATG	2 cut(s)	515, 860
CviQI	GTAC	2 cut(s)	136, 425
DdeI	CTNAG	2 cut(s)	414, 786
DpnI	GATC	5 cut(s)	236, 682, 794, 974, 986
DpnII	GATC	5 cut(s)	234, 680, 792, 972, 984
EaeI	YGGCCR	1 cut(s)	961
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	77, 174, 398
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	339, 626
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	2 cut(s)	518, 863
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FaqI	GGGAC	4 cut(s)	63, 187, 719, 1015
FatI	CATG	2 cut(s)	514, 859
FauI	CCCGC	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	739
FbaI	TGATCA	2 cut(s)	792, 984
Fnu4HI	GCNGC	2 cut(s)	228, 313
FokI	GGATG	4 cut(s)	19, 169, 472, 852
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	228, 313
FspBI	CTAG	3 cut(s)	395, 647, 716
GluI	GCNGC	2 cut(s)	228, 313
GsaI	CCCAGC	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	339, 690, 963
HapII	CCGG	4 cut(s)	61, 488, 519, 887
Hin1II	CATG	2 cut(s)	518, 863
HinfI	GANTC	3 cut(s)	121, 498, 883
HpaII	CCGG	4 cut(s)	61, 488, 519, 887
HphI	GGTGA	3 cut(s)	40, 229, 599
Hpy166II	GTNNAC	2 cut(s)	561, 1076
Hpy188I	TCNGA	3 cut(s)	72, 234, 879
Hpy188III	TCNNGA	2 cut(s)	80, 988
Hpy8I	GTNNAC	2 cut(s)	561, 1076
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	5 cut(s)	250, 274, 370, 884, 945
HpyCH4III	ACNGT	2 cut(s)	532, 946
HpyCH4V	TGCA	7 cut(s)	10, 111, 548, 752, 809, 859, 865
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 304, 321, 391, 659, 908
HpyF3I	CTNAG	2 cut(s)	414, 786
Hsp92II	CATG	2 cut(s)	518, 863
KflI	GGGWCCC	1 cut(s)	77
Ksp22I	TGATCA	2 cut(s)	792, 984
Kzo9I	GATC	5 cut(s)	234, 680, 792, 972, 984
LmnI	GCTCC	3 cut(s)	235, 382, 1052
Lsp1109I	GCAGC	2 cut(s)	239, 299
LweI	GCATC	4 cut(s)	27, 432, 874, 1029
MaeI	CTAG	3 cut(s)	395, 647, 716
MaeIII	GTNAC	1 cut(s)	642
MalI	GATC	5 cut(s)	236, 682, 794, 974, 986
MboI	GATC	5 cut(s)	234, 680, 792, 972, 984
MboII	GAAGA	4 cut(s)	220, 430, 496, 1018
MflI	RGATCY	1 cut(s)	972
MhlI	GDGCHC	3 cut(s)	164, 387, 904
MlsI	TGGCCA	1 cut(s)	963
MluCI	AATT	5 cut(s)	389, 564, 837, 843, 905
MluNI	TGGCCA	1 cut(s)	963
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	2 cut(s)	95, 178
MnlI	CCTC	7 cut(s)	146, 373, 472, 512, 721, 840, 879
Mox20I	TGGCCA	1 cut(s)	963
Mph1103I	ATGCAT	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	1080
MscI	TGGCCA	1 cut(s)	963
Msp20I	TGGCCA	1 cut(s)	963
MspI	CCGG	4 cut(s)	61, 488, 519, 887
MspR9I	CCNGG	4 cut(s)	341, 489, 628, 888
Mva1269I	GAATGC	2 cut(s)	54, 861
MvaI	CCWGG	2 cut(s)	341, 628
MwoI	GCNNNNNNNGC	6 cut(s)	108, 304, 321, 391, 659, 908
NciI	CCSGG	2 cut(s)	489, 888
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	5 cut(s)	234, 680, 792, 972, 984
NlaIII	CATG	2 cut(s)	518, 863
NlaIV	GGNNCC	3 cut(s)	78, 79, 175
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	2 cut(s)	518, 863
PaeI	GCATGC	1 cut(s)	518
PaqCI	CACCTGC	1 cut(s)	763
PctI	GAATGC	2 cut(s)	54, 861
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	2 cut(s)	121, 883
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	229, 314
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	77
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	339, 626
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	2 cut(s)	339, 626
PspN4I	GGNNCC	3 cut(s)	78, 79, 175
PspPI	GGNCC	3 cut(s)	77, 174, 398
PspPPI	RGGWCCY	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	972
RsaI	GTAC	2 cut(s)	137, 426
RsaNI	GTAC	2 cut(s)	136, 425
SacI	GAGCTC	1 cut(s)	387
SatI	GCNGC	2 cut(s)	228, 313
Sau3AI	GATC	5 cut(s)	234, 680, 792, 972, 984
Sau96I	GGNCC	3 cut(s)	77, 174, 398
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	4 cut(s)	341, 489, 628, 888
SduI	GDGCHC	3 cut(s)	164, 387, 904
SfaNI	GCATC	4 cut(s)	27, 432, 874, 1029
SfcI	CTRYAG	1 cut(s)	945
SinI	GGWCC	3 cut(s)	77, 174, 398
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	5 cut(s)	389, 564, 837, 843, 905
SsiI	CCGC	3 cut(s)	26, 64, 298
SspMI	CTAG	3 cut(s)	395, 647, 716
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	4 cut(s)	339, 487, 626, 886
TaaI	ACNGT	2 cut(s)	532, 946
TaqI	TCGA	3 cut(s)	387, 440, 679
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	5 cut(s)	389, 564, 837, 843, 905
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	121, 883
TscAI	CASTG	4 cut(s)	541, 691, 790, 964
TseI	GCWGC	2 cut(s)	227, 312
TspGWI	ACGGA	3 cut(s)	79, 491, 687
TspRI	CASTG	4 cut(s)	541, 691, 790, 964
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	3 cut(s)	77, 174, 398
XceI	RCATGY	2 cut(s)	518, 863
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	3 cut(s)	395, 647, 716
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.