Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003352

Physical Location & Seq

Genomic Coordinates Forward (+)

28949089 .. 28950412

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTGGATGCACAACGTGGCAACTGCGGTGATGATGATGCTCGTAGCCACCGGCATTCTCCGGCGGTTTTCGACGGGTCCCGACCAGTCCGTGGTTGTGAGCAACTTTTGCAAAGCCGTGATTCTGGGGGTGTTGTACTCCATAACCATAGGAGGGATGAGCACTCTGACGGGGACCGATGTCAATCTCATATTGGTTGGAATGTGGAAGAGCTATTTCCCGCAAGTAGCTCCGATCACCTTCAGCACCTGGTTTTGTTTCGCCTTCCCTTCGGCATTGTTGATGTTCTTGGCTTTGTGGGGTTTGCTTTGCTGCTTGTATTGCTCAAGGAGTTCAGGCCAGGCTCTCTCTGTTTATTTAGACAAAGCCCATTTGAAGGAGGAGCTCGAATTGCTAGGTCCAATGGCTTTTGCTGAGAAGATGGTACTGGCTTTGTTTTCGATGCTGATTGTTTTGTGGATGACAAGAAGCATAACGGAGGATATTCCGGGCTGGGGAGTCCTCTTCAACGGGCATGCCGGAAATGGAACTGTCAGTGTTATGATTGCAAATTTTTTGTTCACAATTCCAAGCAAAAAGCAAAAGGGTGAGAAGTTGATGGACTGGGAAAAATGCAAGAAGCTACCCTGGAATATCATATTGTTACTAGGTGCTGGTTTAGCCATAACTGACGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

227

Amino Acids

24.88

Weight (kDa)

8.53

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	1 - 225	1.6e-12	Citrate transporter
Na_sulph_symp	PF00939	34 - 223	2.1e-21	Sodium:sulfate symporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47560
fragaria_vesca	FvH4_3g00890 FvH4_3g00891 FvH4_3g00891
malus_domestica	MD05G1358600.v1.1 MD10G1332900.v1.1 MD10G1333000.v1.1
prunus_persica	Prupe.4G009400_v2.0.a1 Prupe.4G009500_v2.0.a1 Prupe.4G009500_v2.0.a1
pyrus_communis	pycom05g32430 pycom10g28220 pycom10g28230 pycom10g28300 pycom10g28330
rosa_chinensis	RchiOBHm_Chr5g0001361 RchiOBHm_Chr5g0001371
rosa_laevigata	RLG00000030922 RLG00000030923
rosa_multiflora	Rmu_co8451069.1_g000001 Rmu_sc0001706.1_g000004 Rmu_sc0003749.1_g000019 Rmu_sc0003900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00074990
rosa_rugosa	Rorug04G0390100.1 Rorug04G0390200
rosa_samantha	Rh5AG010400 Rh5AG010500 Rh5BG013100 Rh5BG013300 Rh5CG011400 Rh5CG011500 Rh5DG010800 Rh5DG010900
rosa_wichuraiana	Rw5G001000 Rw5G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AciI	CCGC	3 cut(s)	26, 64, 221
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	2 cut(s)	137, 426
AfiI	CCNNNNNNNGG	4 cut(s)	91, 153, 376, 494
AgsI	TTSAA	2 cut(s)	376, 508
AjnI	CCWGG	3 cut(s)	248, 339, 626
AluBI	AGCT	4 cut(s)	213, 230, 385, 622
AluI	AGCT	4 cut(s)	213, 230, 385, 622
Alw21I	GWGCWC	2 cut(s)	164, 387
AlwNI	CAGNNNCTG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	77, 174, 398
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	3 cut(s)	40, 229, 599
AvaII	GGWCC	3 cut(s)	77, 174, 398
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	164, 387
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	2 cut(s)	415, 592
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	3 cut(s)	250, 341, 628
BcnI	CCSGG	1 cut(s)	489
BfaI	CTAG	2 cut(s)	395, 647
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	4 cut(s)	250, 341, 489, 628
Bme18I	GGWCC	3 cut(s)	77, 174, 398
BmgT120I	GGNCC	3 cut(s)	77, 174, 398
BmiI	GGNNCC	3 cut(s)	78, 79, 175
BmrFI	CCNGG	4 cut(s)	250, 341, 489, 628
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	27, 432
BmuI	ACTGGG	1 cut(s)	613
BoxI	GACNNNNGTC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	90, 626
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 153, 376, 494
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	85, 432, 608
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	250, 341, 628
BseDI	CCNNGG	2 cut(s)	90, 626
BseGI	GGATG	3 cut(s)	12, 162, 465
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	4 cut(s)	91, 153, 376, 494
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	3 cut(s)	85, 432, 608
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	492
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	164, 387
BsiSI	CCGG	4 cut(s)	51, 61, 488, 519
BslFI	GGGAC	2 cut(s)	63, 187
BslI	CCNNNNNNNGG	4 cut(s)	91, 153, 376, 494
BsmFI	GGGAC	2 cut(s)	63, 187
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	164, 387
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	3 cut(s)	26, 64, 221
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	78, 79, 175
BspQI	GCTCTTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	85, 432, 608
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	90, 626
BssMI	GATC	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	250, 341, 628
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	2 cut(s)	203, 509
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	12, 162, 465
BstKTI	GATC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 321, 391, 659
BstNI	CCWGG	3 cut(s)	250, 341, 628
BstNSI	RCATGY	1 cut(s)	518
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	248, 339, 487, 626
BstV1I	GCAGC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	12, 162, 465
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	516
CaiI	CAGNNNCTG	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	77, 174, 398
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	136, 425
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	2 cut(s)	136, 425
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	203, 509
EarI	CTCTTC	2 cut(s)	203, 509
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	77, 174, 398
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	248, 339, 626
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	1 cut(s)	518
FaiI	YATR	8 cut(s)	143, 149, 191, 473, 516, 542, 638, 665
FaqI	GGGAC	2 cut(s)	63, 187
FatI	CATG	1 cut(s)	514
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	3 cut(s)	19, 169, 472
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	2 cut(s)	395, 647
GluI	GCNGC	1 cut(s)	313
GsaI	CCCAGC	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	4 cut(s)	51, 61, 488, 519
Hin1II	CATG	1 cut(s)	518
HinfI	GANTC	2 cut(s)	121, 498
HpaII	CCGG	4 cut(s)	51, 61, 488, 519
HphI	GGTGA	3 cut(s)	40, 229, 599
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	2 cut(s)	168, 234
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	250, 274, 279, 370
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	10, 111, 548, 615
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 321, 391, 659
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	518
KflI	GGGWCCC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	234
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	235, 382
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	2 cut(s)	27, 432
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	2 cut(s)	395, 647
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	642
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	3 cut(s)	220, 430, 496
MhlI	GDGCHC	2 cut(s)	164, 387
MluCI	AATT	3 cut(s)	389, 550, 564
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	4 cut(s)	146, 373, 472, 512
MspI	CCGG	4 cut(s)	51, 61, 488, 519
MspR9I	CCNGG	4 cut(s)	250, 341, 489, 628
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	3 cut(s)	250, 341, 628
MwoI	GCNNNNNNNGC	4 cut(s)	108, 321, 391, 659
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	1 cut(s)	518
NlaIV	GGNNCC	3 cut(s)	78, 79, 175
NspI	RCATGY	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	77
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	248, 339, 626
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	3 cut(s)	248, 339, 626
PspN4I	GGNNCC	3 cut(s)	78, 79, 175
PspPI	GGNCC	3 cut(s)	77, 174, 398
PspPPI	RGGWCCY	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	249
RsaI	GTAC	2 cut(s)	137, 426
RsaNI	GTAC	2 cut(s)	136, 425
SacI	GAGCTC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	203
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	3 cut(s)	77, 174, 398
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	4 cut(s)	250, 341, 489, 628
SduI	GDGCHC	2 cut(s)	164, 387
SetI	ASST	9 cut(s)	18, 215, 232, 242, 251, 387, 400, 624, 652
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	2 cut(s)	27, 432
SinI	GGWCC	3 cut(s)	77, 174, 398
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	3 cut(s)	389, 550, 564
SsiI	CCGC	3 cut(s)	26, 64, 221
SspMI	CTAG	2 cut(s)	395, 647
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	4 cut(s)	248, 339, 487, 626
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	71, 387, 440
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	389, 550, 564
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	79, 491
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	3 cut(s)	77, 174, 398
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	518
XspI	CTAG	2 cut(s)	395, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.