Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003900.1

Orthogroup ID

OG0003352

Physical Location & Seq

Genomic Coordinates Forward (+)

1622 .. 2842

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003900.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgtggatgcacaacgtggcaacggcggtgttgatggtgccggtagccaccggaatccttcaccgctttccgacgggtcccaaccagccggtcgttgtgggaaagttttgcagagctgtgattctaggggtgatatactcaacaagcataggagggatgagcactctcactgggacaggtgtgaatctcatattgatcggaatgtggaacagctattttccagaagcaaagccgatcacattcagcacctggttccttttcgggttcccttcggctttgttgatgttcttcgcaatgtgggcgatcctttgcttcttgtattgctcgagaagctcgggccaggctctctcttcttatttcgacaaggactatttgaagaaagagctcgagatgttgggtccaatggcttttgctgagaagatggttttggctttgtttttggtgagaatcaagaacatgctgattttcttgtggatgacaagaagcataacagatgatattcctggctggggagtcctcttcaaggggcgtgccggcgatggaactgccagtgttatggtggcaactttgttgtttattgttccaagcagaaagcaaaagggtgagaagttgatggactggaacaaatgcaagcagctaccctggaacatcatattgttactaggtgctggtttggccatagcagacggagttcgatcaagtggccttgcagatatattatcgaaaaaattggatttcttggaggcagtcccatatttagccctggcacctgctgtgtatggcaaaaactatacacgtgcatccactgcttcttatggttcccggaggcattggtgcgcagtttgctttcttgcttccgacatcaaccccctcaaatacagttggatttgctaccgggcacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

301

Amino Acids

33.44

Weight (kDa)

9.56

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47560
fragaria_vesca	FvH4_3g00890 FvH4_3g00891 FvH4_3g00891
malus_domestica	MD05G1358600.v1.1 MD10G1332900.v1.1 MD10G1333000.v1.1
prunus_persica	Prupe.4G009400_v2.0.a1 Prupe.4G009500_v2.0.a1 Prupe.4G009500_v2.0.a1
pyrus_communis	pycom05g32430 pycom10g28220 pycom10g28230 pycom10g28300 pycom10g28330
rosa_chinensis	RchiOBHm_Chr5g0001361 RchiOBHm_Chr5g0001371
rosa_laevigata	RLG00000030922 RLG00000030923
rosa_multiflora	Rmu_co8451069.1_g000001 Rmu_sc0001706.1_g000004 Rmu_sc0003749.1_g000019 Rmu_sc0003900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00074990
rosa_rugosa	Rorug04G0390100.1 Rorug04G0390200
rosa_samantha	Rh5AG010400 Rh5AG010500 Rh5BG013100 Rh5BG013300 Rh5CG011400 Rh5CG011500 Rh5DG010800 Rh5DG010900
rosa_wichuraiana	Rw5G001000 Rw5G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	778
Acc16I	TGCGCA	1 cut(s)	838
Acc36I	ACCTGC	1 cut(s)	778
AccB1I	GGYRCC	2 cut(s)	37, 766
AciI	CCGC	2 cut(s)	26, 64
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	675
AcvI	CACGTG	1 cut(s)	797
AdeI	CACNNNGTG	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	509, 523
AflIII	ACRYGT	1 cut(s)	794
AgsI	TTSAA	2 cut(s)	376, 523
AjnI	CCWGG	5 cut(s)	248, 339, 502, 641, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	116, 213, 333, 385, 637
AluI	AGCT	5 cut(s)	116, 213, 333, 385, 637
Alw21I	GWGCWC	2 cut(s)	164, 387
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	249
Ama87I	CYCGRG	3 cut(s)	325, 334, 386
AoxI	GGCC	3 cut(s)	337, 675, 703
ApeKI	GCWGC	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	3 cut(s)	77, 337, 398
AsuC2I	CCSGG	2 cut(s)	823, 896
AsuHPI	GGTGA	4 cut(s)	53, 142, 454, 614
AvaI	CYCGRG	3 cut(s)	325, 334, 386
AvaII	GGWCC	2 cut(s)	77, 398
BaeGI	GKGCMC	1 cut(s)	901
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	2 cut(s)	37, 766
BanII	GRGCYC	1 cut(s)	387
BbrPI	CACGTG	1 cut(s)	797
Bbv12I	GWGCWC	2 cut(s)	164, 387
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	4 cut(s)	28, 415, 533, 607
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	5 cut(s)	250, 341, 504, 643, 764
BcnI	CCSGG	2 cut(s)	823, 896
BfaI	CTAG	2 cut(s)	125, 662
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	1 cut(s)	635
BlsI	GCNGC	1 cut(s)	636
Bme1390I	CCNGG	7 cut(s)	250, 341, 504, 643, 764, 823, 896
Bme18I	GGWCC	2 cut(s)	77, 398
BmeT110I	CYCGRG	3 cut(s)	325, 334, 386
BmgT120I	GGNCC	3 cut(s)	77, 337, 398
BmiI	GGNNCC	8 cut(s)	39, 78, 79, 254, 266, 399, 768, 820
BmrFI	CCNGG	7 cut(s)	250, 341, 504, 643, 764, 823, 896
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	823, 896
BsaAI	YACGTR	1 cut(s)	797
BsaJI	CCNNGG	2 cut(s)	641, 762
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 523
Bse118I	RCCGGY	3 cut(s)	40, 88, 533
Bse1I	ACTGG	3 cut(s)	175, 549, 623
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	5 cut(s)	250, 341, 504, 643, 764
BseDI	CCNNGG	2 cut(s)	641, 762
BseGI	GGATG	4 cut(s)	12, 162, 480, 800
BseLI	CCNNNNNNNGG	2 cut(s)	509, 523
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	3 cut(s)	175, 549, 623
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	1 cut(s)	646
BseYI	CCCAGC	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	339, 677, 705
BshNI	GGYRCC	2 cut(s)	37, 766
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	164, 387
BsiHKCI	CYCGRG	3 cut(s)	325, 334, 386
BsiSI	CCGG	6 cut(s)	41, 51, 89, 534, 823, 895
BslFI	GGGAC	3 cut(s)	63, 187, 734
BslI	CCNNNNNNNGG	2 cut(s)	509, 523
BsmFI	GGGAC	3 cut(s)	63, 187, 734
BsnI	GGCC	3 cut(s)	339, 677, 705
BsoBI	CYCGRG	3 cut(s)	325, 334, 386
Bsp1286I	GDGCHC	3 cut(s)	164, 387, 901
Bsp143I	GATC	4 cut(s)	195, 234, 303, 695
BspACI	CCGC	2 cut(s)	26, 64
BspANI	GGCC	3 cut(s)	339, 677, 705
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	8 cut(s)	39, 78, 79, 254, 266, 399, 768, 820
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	1 cut(s)	298
BspT107I	GGYRCC	2 cut(s)	37, 766
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	3 cut(s)	40, 88, 533
BsrI	ACTGG	3 cut(s)	175, 549, 623
BssAI	RCCGGY	3 cut(s)	40, 88, 533
BssECI	CCNNGG	2 cut(s)	641, 762
BssMI	GATC	4 cut(s)	195, 234, 303, 695
Bst2UI	CCWGG	5 cut(s)	250, 341, 504, 643, 764
Bst4CI	ACNGT	1 cut(s)	881
Bst6I	CTCTTC	2 cut(s)	355, 524
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBAI	YACGTR	1 cut(s)	797
BstC8I	GCNNGC	3 cut(s)	531, 535, 632
BstDEI	CTNAG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	4 cut(s)	12, 162, 480, 800
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	4 cut(s)	198, 237, 306, 698
BstMBI	GATC	4 cut(s)	195, 234, 303, 695
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 330, 674, 806, 843
BstNI	CCWGG	5 cut(s)	250, 341, 504, 643, 764
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	7 cut(s)	248, 339, 502, 641, 762, 821, 894
BstSLI	GKGCMC	1 cut(s)	901
BstV1I	GCAGC	1 cut(s)	646
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	339, 677, 705
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	4 cut(s)	12, 162, 480, 800
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	168, 556, 804
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	531, 535, 632
CaiI	CAGNNNCTG	1 cut(s)	249
CfoI	GCGC	1 cut(s)	839
Cfr10I	RCCGGY	3 cut(s)	40, 88, 533
Cfr13I	GGNCC	3 cut(s)	77, 337, 398
CsiI	ACCWGGT	1 cut(s)	248
CviAII	CATG	1 cut(s)	457
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	4 cut(s)	197, 236, 305, 697
DpnII	GATC	4 cut(s)	195, 234, 303, 695
DraIII	CACNNNGTG	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	2 cut(s)	355, 524
EarI	CTCTTC	2 cut(s)	355, 524
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	77, 398
Eco53kI	GAGCTC	1 cut(s)	385
Eco72I	CACGTG	1 cut(s)	797
Eco88I	CYCGRG	3 cut(s)	325, 334, 386
EcoICRI	GAGCTC	1 cut(s)	385
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	5 cut(s)	248, 339, 502, 641, 762
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	1 cut(s)	460
FaqI	GGGAC	3 cut(s)	63, 187, 734
FatI	CATG	1 cut(s)	456
Fnu4HI	GCNGC	1 cut(s)	635
FokI	GGATG	4 cut(s)	19, 169, 487, 787
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	635
FspBI	CTAG	2 cut(s)	125, 662
FspI	TGCGCA	1 cut(s)	838
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	1 cut(s)	635
GsaI	CCCAGC	1 cut(s)	511
HaeIII	GGCC	3 cut(s)	339, 677, 705
HapII	CCGG	6 cut(s)	41, 51, 89, 534, 823, 895
HhaI	GCGC	1 cut(s)	839
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HinfI	GANTC	5 cut(s)	54, 121, 184, 447, 513
HpaII	CCGG	6 cut(s)	41, 51, 89, 534, 823, 895
HphI	GGTGA	4 cut(s)	53, 142, 454, 614
Hpy188I	TCNGA	3 cut(s)	72, 200, 859
Hpy188III	TCNNGA	4 cut(s)	221, 327, 388, 451
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	68, 279
HpyCH4III	ACNGT	1 cut(s)	881
HpyCH4IV	ACGT	3 cut(s)	15, 796, 901
HpyCH4V	TGCA	5 cut(s)	10, 111, 630, 710, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 330, 674, 806, 843
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	3 cut(s)	15, 796, 901
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	837
KflI	GGGWCCC	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	533
KroNI	GCCGGC	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	195, 234, 303, 695
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	809
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	2 cut(s)	125, 662
MaeII	ACGT	3 cut(s)	15, 796, 901
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	4 cut(s)	197, 236, 305, 697
MboI	GATC	4 cut(s)	195, 234, 303, 695
MboII	GAAGA	5 cut(s)	280, 342, 388, 430, 511
MhlI	GDGCHC	3 cut(s)	164, 387, 901
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	1 cut(s)	728
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	3 cut(s)	95, 863, 882
MnlI	CCTC	5 cut(s)	146, 527, 736, 819, 881
Mox20I	TGGCCA	1 cut(s)	677
MroNI	GCCGGC	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	677
MspI	CCGG	6 cut(s)	41, 51, 89, 534, 823, 895
MspR9I	CCNGG	7 cut(s)	250, 341, 504, 643, 764, 823, 896
MvaI	CCWGG	5 cut(s)	250, 341, 504, 643, 764
MwoI	GCNNNNNNNGC	5 cut(s)	299, 330, 674, 806, 843
NaeI	GCCGGC	1 cut(s)	535
NciI	CCSGG	2 cut(s)	823, 896
NdeII	GATC	4 cut(s)	195, 234, 303, 695
NgoMIV	GCCGGC	1 cut(s)	533
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	8 cut(s)	39, 78, 79, 254, 266, 399, 768, 820
NsbI	TGCGCA	1 cut(s)	838
NspI	RCATGY	1 cut(s)	460
PaeR7I	CTCGAG	2 cut(s)	325, 386
PaqCI	CACCTGC	1 cut(s)	778
PdiI	GCCGGC	1 cut(s)	535
PfeI	GAWTC	4 cut(s)	54, 121, 184, 447
PfoI	TCCNGGA	1 cut(s)	821
PkrI	GCNGC	1 cut(s)	636
PleI	GAGTC	1 cut(s)	521
PmaCI	CACGTG	1 cut(s)	797
PmlI	CACGTG	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	521
Ppu21I	YACGTR	1 cut(s)	797
PpuMI	RGGWCCY	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	5 cut(s)	248, 339, 502, 641, 762
PspCI	CACGTG	1 cut(s)	797
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	5 cut(s)	248, 339, 502, 641, 762
PspN4I	GGNNCC	8 cut(s)	39, 78, 79, 254, 266, 399, 768, 820
PspPI	GGNCC	3 cut(s)	77, 337, 398
PspPPI	RGGWCCY	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	387
SatI	GCNGC	1 cut(s)	635
Sau3AI	GATC	4 cut(s)	195, 234, 303, 695
Sau96I	GGNCC	3 cut(s)	77, 337, 398
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	7 cut(s)	250, 341, 504, 643, 764, 823, 896
SduI	GDGCHC	3 cut(s)	164, 387, 901
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	809
Sfr274I	CTCGAG	2 cut(s)	325, 386
SinI	GGWCC	2 cut(s)	77, 398
SlaI	CTCGAG	2 cut(s)	325, 386
SmlI	CTYRAG	2 cut(s)	325, 386
SmoI	CTYRAG	2 cut(s)	325, 386
Sse9I	AATT	1 cut(s)	728
SsiI	CCGC	2 cut(s)	26, 64
SspMI	CTAG	2 cut(s)	125, 662
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	7 cut(s)	248, 339, 502, 641, 762, 821, 894
TaaI	ACNGT	1 cut(s)	881
TaiI	ACGT	3 cut(s)	18, 799, 904
TaqI	TCGA	5 cut(s)	326, 360, 387, 694, 722
TasI	AATT	1 cut(s)	728
TfiI	GAWTC	4 cut(s)	54, 121, 184, 447
TscAI	CASTG	3 cut(s)	175, 556, 811
TseI	GCWGC	1 cut(s)	634
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	3 cut(s)	175, 556, 811
VpaK11BI	GGWCC	2 cut(s)	77, 398
XagI	CCTNNNNNAGG	1 cut(s)	521
XceI	RCATGY	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XhoI	CTCGAG	2 cut(s)	325, 386
XspI	CTAG	2 cut(s)	125, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.