Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003352

Physical Location & Seq

Genomic Coordinates Reverse (-)

981561 .. 982828

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG013100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTGGAAGAGCTATTTTCCAGAAGCAAAGCCGATCACATTCAGCACCTGGTTCCTTTTCGGGTTCCCTTCGGCTTTGTTGATGTTCTTCACAATGTGGGGGATCCTTTGCTTCTTGTATTGCTCGAGAAGCTCGGGCCAGGCTCTCTCTTCTTATTTCGACAAGGACTATTTGAAGAAAGAGCTCGAGATGTTGGGTCCAATGGCTTTTGCTGAGAAGATGGTTTTGGCTTTGTTTTCGATGCTGATTTTCTTGTGGATGACAAGAAGCATAACAGATGATATTCCTGGCTGGGGAGTCCTCTTCAAAGGGCGTGCCGGCGATGGAACTGCCAGTGTTATGGTAGCAACTTTGTTGTTTATTGTTCCAAGCAGAAAGCAAAAGGGTGAGAAGTTGATGGACTGGAACAAATGCAAGCAGCTACCCTGGAACATCATATTGTTACTAGGTGCTGGTTTGGCCATAGCAGACGGAGTCCGATCAAGTGGCCTTGCAGATATATTGTCGAAAACATTGGATTTCTTGGAGGCAGTCCCATATTTAGCTATGGCACCTGCTGTGTGTCTCATAAGCAGTACCATCACTGAGTTGATTACATCCAACAATGCCACTGCGACGCTTATTGTGCCTCTCCTAATTCAGATGGCAAAAACTATACACGTGCATCCACTGCTTCTTATGGTTCCCGGAGGCATTGGTGCGCAGTTTGCTTTCTTGCTTCCCACATCAACCCCCTCAAATACAGTTGGATTTGCTACCGGGCACGTTGAAATCCGAGATATGATCATGGTTGGTTTGGCATTAAAGATTGCTGGGATTGCTGTGCTTTCCGTTTTGATGCCTACACTAGGAGCTTTTGTTTTCGGGACAAATGCACGAGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

295

Amino Acids

32.11

Weight (kDa)

8.86

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	8 - 227	5.6e-15	Citrate transporter
Na_sulph_symp	PF00939	12 - 281	1.1e-34	Sodium:sulfate symporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47560
fragaria_vesca	FvH4_3g00890 FvH4_3g00891 FvH4_3g00891
malus_domestica	MD05G1358600.v1.1 MD10G1332900.v1.1 MD10G1333000.v1.1
prunus_persica	Prupe.4G009400_v2.0.a1 Prupe.4G009500_v2.0.a1 Prupe.4G009500_v2.0.a1
pyrus_communis	pycom05g32430 pycom10g28220 pycom10g28230 pycom10g28300 pycom10g28330
rosa_chinensis	RchiOBHm_Chr5g0001361 RchiOBHm_Chr5g0001371
rosa_laevigata	RLG00000030922 RLG00000030923
rosa_multiflora	Rmu_co8451069.1_g000001 Rmu_sc0001706.1_g000004 Rmu_sc0003749.1_g000019 Rmu_sc0003900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00074990
rosa_rugosa	Rorug04G0390100.1 Rorug04G0390200
rosa_samantha	Rh5AG010400 Rh5AG010500 Rh5BG013100 Rh5BG013300 Rh5CG011400 Rh5CG011500 Rh5DG010800 Rh5DG010900
rosa_wichuraiana	Rw5G001000 Rw5G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc16I	TGCGCA	1 cut(s)	702
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	550
AclWI	GGATC	2 cut(s)	97, 110
AcoI	YGGCCR	1 cut(s)	459
AcvI	CACGTG	1 cut(s)	661
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	2 cut(s)	293, 848
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	175, 307, 770
AjnI	CCWGG	4 cut(s)	47, 138, 286, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	6 cut(s)	12, 132, 184, 421, 545, 854
AluI	AGCT	6 cut(s)	12, 132, 184, 421, 545, 854
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	97, 110
AlwNI	CAGNNNCTG	1 cut(s)	48
Ama87I	CYCGRG	3 cut(s)	124, 133, 185
AoxI	GGCC	3 cut(s)	136, 459, 487
ApeKI	GCWGC	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	2 cut(s)	136, 197
AsuC2I	CCSGG	2 cut(s)	687, 760
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	3 cut(s)	124, 133, 185
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	186
BauI	CACGAG	1 cut(s)	876
BbrPI	CACGTG	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	5 cut(s)	214, 317, 391, 587, 637
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	4 cut(s)	49, 140, 288, 427
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	2 cut(s)	687, 760
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	2 cut(s)	446, 848
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
Bme1390I	CCNGG	6 cut(s)	49, 140, 288, 427, 687, 760
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	3 cut(s)	124, 133, 185
BmgT120I	GGNCC	2 cut(s)	136, 197
BmiI	GGNNCC	6 cut(s)	53, 65, 104, 198, 552, 684
BmrFI	CCNGG	6 cut(s)	49, 140, 288, 427, 687, 760
BmsI	GCATC	3 cut(s)	231, 673, 828
BpuMI	CCSGG	2 cut(s)	687, 760
BsaAI	YACGTR	1 cut(s)	661
BsaJI	CCNNGG	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 848
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	333, 407
BseBI	CCWGG	4 cut(s)	49, 140, 288, 427
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	3 cut(s)	264, 596, 664
BseLI	CCNNNNNNNGG	2 cut(s)	293, 848
BseMII	CTCAG	2 cut(s)	204, 576
BseNI	ACTGG	2 cut(s)	333, 407
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	1 cut(s)	430
BseYI	CCCAGC	2 cut(s)	291, 812
BshFI	GGCC	3 cut(s)	138, 461, 489
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	3 cut(s)	124, 133, 185
BsiSI	CCGG	3 cut(s)	318, 687, 759
BslFI	GGGAC	2 cut(s)	518, 880
BslI	CCNNNNNNNGG	2 cut(s)	293, 848
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	518, 880
BsnI	GGCC	3 cut(s)	138, 461, 489
BsoBI	CYCGRG	3 cut(s)	124, 133, 185
Bsp1286I	GDGCHC	2 cut(s)	186, 765
Bsp143I	GATC	4 cut(s)	33, 102, 479, 783
BspANI	GGCC	3 cut(s)	138, 461, 489
BspCNI	CTCAG	2 cut(s)	205, 577
BspLI	GGNNCC	6 cut(s)	53, 65, 104, 198, 552, 684
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	2 cut(s)	97, 110
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	333, 407
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	4 cut(s)	33, 102, 479, 783
BssSI	CACGAG	1 cut(s)	876
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	4 cut(s)	49, 140, 288, 427
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	3 cut(s)	2, 154, 308
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstBAI	YACGTR	1 cut(s)	661
BstC8I	GCNNGC	3 cut(s)	315, 319, 416
BstDEI	CTNAG	2 cut(s)	213, 585
BstENI	CCTNNNNNAGG	1 cut(s)	846
BstF5I	GGATG	3 cut(s)	264, 596, 664
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	4 cut(s)	36, 105, 482, 786
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	4 cut(s)	33, 102, 479, 783
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 458, 625, 670, 707, 818
BstNI	CCWGG	4 cut(s)	49, 140, 288, 427
BstSCI	CCNGG	6 cut(s)	47, 138, 286, 425, 685, 758
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	138, 461, 489
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	264, 596, 664
BtsI	GCAGTG	2 cut(s)	609, 668
BtsIMutI	CAGTG	4 cut(s)	340, 582, 609, 668
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	3 cut(s)	315, 319, 416
CaiI	CAGNNNCTG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	136, 197
CseI	GACGC	1 cut(s)	625
CsiI	ACCWGGT	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	1 cut(s)	787
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	2 cut(s)	213, 585
DpnI	GATC	4 cut(s)	35, 104, 481, 785
DpnII	GATC	4 cut(s)	33, 102, 479, 783
DraIII	CACNNNGTG	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	2, 154, 308
EarI	CTCTTC	3 cut(s)	2, 154, 308
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	184
Eco72I	CACGTG	1 cut(s)	661
Eco88I	CYCGRG	3 cut(s)	124, 133, 185
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	846
EcoRII	CCWGG	4 cut(s)	47, 138, 286, 425
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	1 cut(s)	790
FaqI	GGGAC	2 cut(s)	518, 880
FatI	CATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	3 cut(s)	271, 583, 651
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	419
FspBI	CTAG	2 cut(s)	446, 848
FspI	TGCGCA	1 cut(s)	702
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	1 cut(s)	419
GsaI	CCCAGC	2 cut(s)	295, 816
HaeIII	GGCC	3 cut(s)	138, 461, 489
HapII	CCGG	3 cut(s)	318, 687, 759
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	1 cut(s)	790
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HinfI	GANTC	2 cut(s)	297, 474
HpaII	CCGG	3 cut(s)	318, 687, 759
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	3 cut(s)	479, 642, 776
Hpy188III	TCNNGA	4 cut(s)	20, 126, 187, 865
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4IV	ACGT	2 cut(s)	660, 765
HpyCH4V	TGCA	4 cut(s)	414, 494, 664, 875
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 458, 625, 670, 707, 818
HpyF3I	CTNAG	2 cut(s)	213, 585
HpySE526I	ACGT	2 cut(s)	660, 765
Hsp92II	CATG	1 cut(s)	790
HspAI	GCGC	1 cut(s)	701
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	4 cut(s)	33, 102, 479, 783
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	3 cut(s)	231, 673, 828
MabI	ACCWGGT	1 cut(s)	47
MaeI	CTAG	2 cut(s)	446, 848
MaeII	ACGT	2 cut(s)	660, 765
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	4 cut(s)	35, 104, 481, 785
MboI	GATC	4 cut(s)	33, 102, 479, 783
MboII	GAAGA	6 cut(s)	19, 79, 141, 187, 229, 295
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	186, 765
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	1 cut(s)	636
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	2 cut(s)	306, 483
MmeI	TCCRAC	3 cut(s)	624, 727, 862
MnlI	CCTC	5 cut(s)	311, 520, 639, 683, 745
Mox20I	TGGCCA	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	1 cut(s)	803
Msp20I	TGGCCA	1 cut(s)	461
MspI	CCGG	3 cut(s)	318, 687, 759
MspR9I	CCNGG	6 cut(s)	49, 140, 288, 427, 687, 760
MvaI	CCWGG	4 cut(s)	49, 140, 288, 427
MwoI	GCNNNNNNNGC	6 cut(s)	129, 458, 625, 670, 707, 818
NaeI	GCCGGC	1 cut(s)	319
NciI	CCSGG	2 cut(s)	687, 760
NdeII	GATC	4 cut(s)	33, 102, 479, 783
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	790
NlaIV	GGNNCC	6 cut(s)	53, 65, 104, 198, 552, 684
NsbI	TGCGCA	1 cut(s)	702
PaeR7I	CTCGAG	2 cut(s)	124, 185
PaqCI	CACCTGC	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	2
PdiI	GCCGGC	1 cut(s)	319
PflFI	GACNNNGTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	2 cut(s)	305, 482
PmaCI	CACGTG	1 cut(s)	661
PmlI	CACGTG	1 cut(s)	661
PpsI	GAGTC	2 cut(s)	305, 482
Ppu21I	YACGTR	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	4 cut(s)	47, 138, 286, 425
PspCI	CACGTG	1 cut(s)	661
PspFI	CCCAGC	2 cut(s)	291, 812
PspGI	CCWGG	4 cut(s)	47, 138, 286, 425
PspN4I	GGNNCC	6 cut(s)	53, 65, 104, 198, 552, 684
PspPI	GGNCC	2 cut(s)	136, 197
PstNI	CAGNNNCTG	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	803
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	4 cut(s)	33, 102, 479, 783
Sau96I	GGNCC	2 cut(s)	136, 197
SchI	GAGTC	2 cut(s)	306, 483
ScrFI	CCNGG	6 cut(s)	49, 140, 288, 427, 687, 760
SduI	GDGCHC	2 cut(s)	186, 765
SexAI	ACCWGGT	1 cut(s)	47
SfaNI	GCATC	3 cut(s)	231, 673, 828
Sfr274I	CTCGAG	2 cut(s)	124, 185
SinI	GGWCC	1 cut(s)	197
SlaI	CTCGAG	2 cut(s)	124, 185
SmlI	CTYRAG	2 cut(s)	124, 185
SmoI	CTYRAG	2 cut(s)	124, 185
Sse9I	AATT	1 cut(s)	636
SspMI	CTAG	2 cut(s)	446, 848
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	6 cut(s)	47, 138, 286, 425, 685, 758
TaaI	ACNGT	1 cut(s)	745
TaiI	ACGT	2 cut(s)	663, 768
TaqI	TCGA	5 cut(s)	125, 159, 186, 239, 506
TasI	AATT	1 cut(s)	636
Tru1I	TTAA	1 cut(s)	803
Tru9I	TTAA	1 cut(s)	803
TscAI	CASTG	4 cut(s)	340, 589, 616, 675
TseI	GCWGC	1 cut(s)	418
TspGWI	ACGGA	2 cut(s)	486, 820
TspRI	CASTG	4 cut(s)	340, 589, 616, 675
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	846
XhoI	CTCGAG	2 cut(s)	124, 185
XspI	CTAG	2 cut(s)	446, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.