Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451069.1

Orthogroup ID

OG0003352

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1184

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 793 bp

atgtggatgcacaacgtgtcagctgtggtgatgatgatgccgatggcgaccggaatcctgcatcgttttccggtgggtctcgatcagtccgttgtgtcgagcaacttctgcagagctgtggttctgggggtgacgtactctacagccattggagggatgagtactcttacggggacaggcgtcaatctgatattggttggaatgtggaagagctattttccggaagaggagccgatcagcttcagtacttggtttctttttgggtttcctatggctttgttgattttcctggccttgtggatcatactttgctgcttgtattgctccaaaagttcaggccctgctctctctgcttatttggataaagcccatttgaagagggagctcgaaatgttaggtccaatggcttttgctgagaagatgatattggctgtgttttcgatgttgatagttttgtggatgacaagaagcattacagacgagattcccggctggggagccctcttcaacgggcgtgccggtgatggaactgccagtgttatgatggcaacattgctgttcattattcctaacaagaagcaaaaaggtgagaagttgatggactggaacaaatgcaagaagctaccatggaacattgtgttgttactaggtgctggtttcgccatagctgatggggttcgaactagtggcctcgcagagatactatccgaagccttagatttcttggaacaagtcccctacttggcaattgcaccagctgtgtgtctcattagtagtaccatcactgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

264

Amino Acids

28.89

Weight (kDa)

6.3

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47560
fragaria_vesca	FvH4_3g00890 FvH4_3g00891 FvH4_3g00891
malus_domestica	MD05G1358600.v1.1 MD10G1332900.v1.1 MD10G1333000.v1.1
prunus_persica	Prupe.4G009400_v2.0.a1 Prupe.4G009500_v2.0.a1 Prupe.4G009500_v2.0.a1
pyrus_communis	pycom05g32430 pycom10g28220 pycom10g28230 pycom10g28300 pycom10g28330
rosa_chinensis	RchiOBHm_Chr5g0001361 RchiOBHm_Chr5g0001371
rosa_laevigata	RLG00000030922 RLG00000030923
rosa_multiflora	Rmu_co8451069.1_g000001 Rmu_sc0001706.1_g000004 Rmu_sc0003749.1_g000019 Rmu_sc0003900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00074990
rosa_rugosa	Rorug04G0390100.1 Rorug04G0390200
rosa_samantha	Rh5AG010400 Rh5AG010500 Rh5BG013100 Rh5BG013300 Rh5CG011400 Rh5CG011500 Rh5DG010800 Rh5DG010900
rosa_wichuraiana	Rw5G001000 Rw5G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	220
AclWI	GGATC	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	4 cut(s)	137, 163, 247, 778
AfiI	CCNNNNNNNGG	3 cut(s)	153, 494, 742
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	376, 508
AhlI	ACTAGT	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	8 cut(s)	23, 116, 213, 240, 385, 622, 668, 758
AluI	AGCT	8 cut(s)	23, 116, 213, 240, 385, 622, 668, 758
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	83, 770
AlwI	GGATC	1 cut(s)	308
AlwNI	CAGNNNCTG	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	3 cut(s)	291, 337, 688
ApeKI	GCWGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	338, 398
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	4 cut(s)	40, 142, 533, 599
AsuII	TTCGAA	1 cut(s)	679
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	387, 502
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	6 cut(s)	37, 518, 538, 592, 665, 788
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	83, 770
BcuI	ACTAGT	1 cut(s)	683
BfaI	CTAG	2 cut(s)	647, 684
BfmI	CTRYAG	2 cut(s)	109, 141
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmcAI	AGTACT	2 cut(s)	163, 247
Bme1390I	CCNGG	2 cut(s)	290, 489
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	338, 398
BmiI	GGNNCC	2 cut(s)	231, 499
BmrFI	CCNGG	2 cut(s)	290, 489
BmsI	GCATC	2 cut(s)	27, 70
BoxI	GACNNNNGTC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	679
BpuMI	CCSGG	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	626
BsaWI	WCCGGW	3 cut(s)	50, 70, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 494, 742
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	534, 608
Bse3DI	GCAATG	1 cut(s)	551
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	3 cut(s)	12, 162, 465
BseLI	CCNNNNNNNGG	3 cut(s)	153, 494, 742
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	405, 777
BseNI	ACTGG	2 cut(s)	534, 608
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	492
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	293, 339, 690
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	5 cut(s)	51, 71, 221, 489, 519
BslFI	GGGAC	2 cut(s)	187, 719
BslI	CCNNNNNNNGG	3 cut(s)	153, 494, 742
BsmAI	GTCTC	2 cut(s)	83, 770
BsmFI	GGGAC	2 cut(s)	187, 719
BsnI	GGCC	3 cut(s)	293, 339, 690
Bso31I	GGTCTC	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	679
Bsp1286I	GDGCHC	2 cut(s)	387, 502
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	82, 234, 300
Bsp19I	CCATGG	1 cut(s)	626
BspANI	GGCC	3 cut(s)	293, 339, 690
BspCNI	CTCAG	2 cut(s)	406, 778
BspEI	TCCGGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	231, 499
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	534, 608
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	3 cut(s)	82, 234, 300
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	290
Bst6I	CTCTTC	4 cut(s)	203, 219, 371, 509
BstACI	GRCGYC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	414, 715, 786
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	12, 162, 465
BstKTI	GATC	3 cut(s)	85, 237, 303
BstMAI	GTCTC	2 cut(s)	83, 770
BstMBI	GATC	3 cut(s)	82, 234, 300
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 321, 350, 659
BstNI	CCWGG	1 cut(s)	290
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	288, 487
BstSFI	CTRYAG	2 cut(s)	109, 141
BstV1I	GCAGC	1 cut(s)	299
BsuRI	GGCC	3 cut(s)	293, 339, 690
BtgI	CCRYGG	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	12, 162, 465
BtsIMutI	CAGTG	2 cut(s)	541, 783
Cac8I	GCNNGC	1 cut(s)	516
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	338, 398
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	136, 162, 246, 777
CviAII	CATG	1 cut(s)	627
CviQI	GTAC	4 cut(s)	136, 162, 246, 777
DdeI	CTNAG	3 cut(s)	414, 715, 786
DpnI	GATC	3 cut(s)	84, 236, 302
DpnII	GATC	3 cut(s)	82, 234, 300
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	4 cut(s)	203, 219, 371, 509
EarI	CTCTTC	4 cut(s)	203, 219, 371, 509
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	2 cut(s)	387, 502
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	626
EcoT38I	GRGCYC	2 cut(s)	387, 502
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	1 cut(s)	630
FaiI	YATR	5 cut(s)	272, 305, 542, 628, 665
FaqI	GGGAC	2 cut(s)	187, 719
FatI	CATG	1 cut(s)	626
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	3 cut(s)	19, 169, 472
FriOI	GRGCYC	2 cut(s)	387, 502
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	2 cut(s)	647, 684
GluI	GCNGC	1 cut(s)	313
GsaI	CCCAGC	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	293, 339, 690
HapII	CCGG	5 cut(s)	51, 71, 221, 489, 519
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	630
HinfI	GANTC	2 cut(s)	54, 484
HpaII	CCGG	5 cut(s)	51, 71, 221, 489, 519
HphI	GGTGA	4 cut(s)	40, 142, 533, 599
Hpy188I	TCNGA	2 cut(s)	189, 709
Hpy188III	TCNNGA	2 cut(s)	80, 221
HpyCH4IV	ACGT	2 cut(s)	15, 134
HpyCH4V	TGCA	5 cut(s)	10, 61, 111, 615, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 321, 350, 659
HpyF3I	CTNAG	3 cut(s)	414, 715, 786
HpySE526I	ACGT	2 cut(s)	15, 134
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	630
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	82, 234, 300
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	4 cut(s)	229, 329, 382, 497
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	2 cut(s)	27, 70
MaeI	CTAG	2 cut(s)	647, 684
MaeII	ACGT	2 cut(s)	15, 134
MaeIII	GTNAC	2 cut(s)	130, 642
MalI	GATC	3 cut(s)	84, 236, 302
MboI	GATC	3 cut(s)	82, 234, 300
MboII	GAAGA	5 cut(s)	220, 236, 388, 430, 496
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	2 cut(s)	387, 502
MluCI	AATT	1 cut(s)	747
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	146, 220, 372, 512, 701
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	1 cut(s)	791
MspA1I	CMGCKG	2 cut(s)	23, 758
MspI	CCGG	5 cut(s)	51, 71, 221, 489, 519
MspR9I	CCNGG	2 cut(s)	290, 489
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	108, 321, 350, 659
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	3 cut(s)	82, 234, 300
NlaIII	CATG	1 cut(s)	630
NlaIV	GGNNCC	2 cut(s)	231, 499
NmuCI	GTSAC	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	54, 484
PkrI	GCNGC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	231, 499
PspPI	GGNCC	2 cut(s)	338, 398
PstI	CTGCAG	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	341
PvuII	CAGCTG	2 cut(s)	23, 758
RsaI	GTAC	4 cut(s)	137, 163, 247, 778
RsaNI	GTAC	4 cut(s)	136, 162, 246, 777
SacI	GAGCTC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	82, 234, 300
Sau96I	GGNCC	2 cut(s)	338, 398
ScaI	AGTACT	2 cut(s)	163, 247
ScrFI	CCNGG	2 cut(s)	290, 489
SduI	GDGCHC	2 cut(s)	387, 502
SfaNI	GCATC	2 cut(s)	27, 70
SfcI	CTRYAG	2 cut(s)	109, 141
SfuI	TTCGAA	1 cut(s)	679
SinI	GGWCC	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	683
Sse9I	AATT	1 cut(s)	747
SspMI	CTAG	2 cut(s)	647, 684
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	288, 487
StyI	CCWWGG	1 cut(s)	626
TaiI	ACGT	2 cut(s)	18, 137
TaqI	TCGA	5 cut(s)	81, 98, 387, 440, 679
TasI	AATT	1 cut(s)	747
TatI	WGTACW	2 cut(s)	161, 245
TfiI	GAWTC	2 cut(s)	54, 484
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	2 cut(s)	541, 790
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	550
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	541, 790
VpaK11BI	GGWCC	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XspI	CTAG	2 cut(s)	647, 684
ZrmI	AGTACT	2 cut(s)	163, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.