Prupe.4G009400_v2.0.a1

Tonoplast dicarboxylate

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
465183 .. 467397
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G009400.1

Sequence Viewer

Length: 1611 bp
ATGGATATTCCCCCCTCCGATGACCCCAAAACCCCACTTCTCCCACTTGATGATCCAAACCAAAGGTCACGGATAAAATTCCCTTCATCATTGAAATCCATTCTAACATCCAACAACTTCAACATCCTGCTAGGGCCTCTTTTGAGCACCATTATATGTCTCCATGTCAACCTAGATGGCTCCCTCACCACCAGCCGCAACATGTTGGCAGTGCTTGCATGGATTTTTGCTTGGTGGCTCACAGAGGCAGTGCCCATGCCAATTACCTCCATGTCCCCGCTCTTCCTCTTCCCGCTCTTTGGCATTGCCTCTGCTGATGATGTTGCCCACTCTTACATGAACGATGTCATTGCCCTTGTTCTTGGAAGCTTCATATTGGCTCTTGCCGTCGAGCATTATAATATACACAAAAGATTGGCCTTGAATATAACCCTGGTGTTCTGTGGAGATCCCCTGAATCCGCCATTGCTGCTACTGGGGATATGTGGGACAGCAGCCTTCGTGAGCATGTGGATGCACAACGTGGCCACGGCCGTGATGATGATGCCCGTCGCCACCGGCATCCTTCGACGCTTTCCGACAGGCCCCAATCAGTCCGTCGTTGTGGGCAAGTTTTGCAGAGCGGTGGTTCTTGGCGTGTTATACTCCATAACCATAGGAGGCATGAGCACTCTCACGGGGACAGGTGTCAATCTCATATTGGTTGGGATGTGGCAGAGCTATTTCCCAGAGGCAGCTCCAGTCACCTTCAGCACCTGGTTCTTGTTTGCTTTCCCTTCGGCTCTGTTGATGTTCTTGGCTTTGTGGGCTTTACTGTGCTGCTTGTATTGCTCCAGGAGTTCAGGCCAGGCTCTCTCTGTTTATTTCGACAAAGCCCATTTGAAGGAGGAGCTCGAAATGTTAGGTCCAATGGCTTATGCTGAGAAGATGGTGTTGGCTTTGTTTTCGATGCTGATAGTTTTGTGGATGACAAGAAGCATAACAGAGGATATTCCTGGCTGGGGAGTCCTCTTCAAGGGGCTTGCCGGAGACGGAACTGTCAGTGTTATGATTGCAACTTTGCTGTTTATAGTTCCAAGCAAAAAGCAAAAGGGTGAGAAGTTGATGGACTGGGACAAATGCAAGAAGCTACCCTGGAACATCATATTGTTACTAGGTGCCGGTTTAGCCATCGCTGACGGGGTTCGATCTAGTGGCCTTGCAGATATATTATCAGAAAGCTTAGATTTCTTGGAGGCAGTCCCATATTTAGCCATGACACCGGCTGTCTGTCTCATCAGTAGTACCATCACTGAGTTAATCACATCAAACAATGCCACTGCGACGCTTATTGTTCCTCTCCTGATTCAAATAGCAAAAACTATGCATGTGCATCCACTCCTTCTCATGATTCCAGGAGGCATTGGGGCTCAATTTGCTTTCTTGCTTCCAACAGCAACCCCTTCAAATACCGTAGGGTTTGCAACTGGCCACATTGAAATCCAAGATATGATTAAGATTGGCTTGCCATTAAAGATTGCTGGAATTGCTGTGCTGTCCCTTTTGATGCCTACACTTGGTAACATTACGTTTCTTATCTCTTATCAGCTATCTTTGACTAATTTTATGTAG

Protein Analysis

537

Amino Acids

58.08

Weight (kDa)

6.3

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AasI GACNNNNNNGTC 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 1157
AccBSI CCGCTC 3 cut(s) 280, 295, 623
AciI CCGC 5 cut(s) 196, 278, 293, 461, 623
AclWI GGATC 2 cut(s) 47, 443
AcoI YGGCCR 3 cut(s) 525, 531, 1468
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 733
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 1 cut(s) 1285
AfiI CCNNNNNNNGG 5 cut(s) 299, 883, 1001, 1015, 1556
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 8 cut(s) 94, 121, 424, 883, 1015, 1349, 1446, 1478
AjnI CCWGG 7 cut(s) 432, 755, 833, 846, 994, 1133, 1393
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 7 cut(s) 369, 720, 737, 892, 1129, 1221, 1588
AluI AGCT 7 cut(s) 369, 720, 737, 892, 1129, 1221, 1588
Alw21I GWGCWC 3 cut(s) 149, 671, 894
Alw26I GTCTC 3 cut(s) 164, 1023, 1277
AlwI GGATC 2 cut(s) 47, 443
AlwNI CAGNNNCTG 1 cut(s) 756
AoxI GGCC 8 cut(s) 134, 417, 525, 531, 583, 844, 1195, 1468
ApeKI GCWGC 4 cut(s) 469, 494, 734, 819
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 3 cut(s) 134, 584, 905
AsuHPI GGTGA 3 cut(s) 178, 736, 1106
AvaII GGWCC 1 cut(s) 905
BaeGI GKGCMC 1 cut(s) 255
BalI TGGCCA 2 cut(s) 527, 1470
BanI GGYRCC 1 cut(s) 1157
BanII GRGCYC 2 cut(s) 894, 1411
Bbv12I GWGCWC 3 cut(s) 149, 671, 894
BbvI GCAGC 4 cut(s) 456, 506, 746, 806
BccI CCATC 5 cut(s) 170, 922, 1099, 1178, 1295
BceAI ACGGC 3 cut(s) 371, 518, 546
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
BcoDI GTCTC 3 cut(s) 164, 1023, 1277
BfaI CTAG 4 cut(s) 131, 173, 1154, 1191
BisI GCNGC 5 cut(s) 196, 470, 495, 735, 820
BlsI GCNGC 5 cut(s) 197, 471, 496, 736, 821
Bme1390I CCNGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 3 cut(s) 134, 584, 905
BmiI GGNNCC 3 cut(s) 181, 586, 1159
BmrFI CCNGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
BmrI ACTGGG 2 cut(s) 485, 1120
BmsI GCATC 6 cut(s) 504, 534, 570, 939, 1381, 1536
BmuI ACTGGG 2 cut(s) 485, 1120
BoxI GACNNNNGTC 1 cut(s) 686
BpmI CTGGAG 2 cut(s) 723, 817
BsaJI CCNNGG 3 cut(s) 432, 528, 1133
Bsc4I CCNNNNNNNGG 5 cut(s) 299, 883, 1001, 1015, 1556
Bse118I RCCGGY 3 cut(s) 557, 1160, 1261
Bse1I ACTGG 4 cut(s) 480, 740, 1115, 1471
Bse3DI GCAATG 3 cut(s) 303, 348, 464
BseBI CCWGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
BseDI CCNNGG 3 cut(s) 432, 528, 1133
BseGI GGATG 7 cut(s) 107, 123, 519, 561, 714, 972, 1372
BseLI CCNNNNNNNGG 5 cut(s) 299, 883, 1001, 1015, 1556
BseMI GCAATG 3 cut(s) 303, 348, 464
BseMII CTCAG 2 cut(s) 912, 1284
BseNI ACTGG 4 cut(s) 480, 740, 1115, 1471
BseRI GAGGAG 1 cut(s) 902
BseSI GKGCMC 1 cut(s) 255
BseX3I CGGCCG 1 cut(s) 531
BseXI GCAGC 4 cut(s) 456, 506, 746, 806
BseYI CCCAGC 1 cut(s) 999
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 8 cut(s) 136, 419, 527, 533, 585, 846, 1197, 1470
BshNI GGYRCC 1 cut(s) 1157
BsiEI CGRYCG 1 cut(s) 534
BsiHKAI GWGCWC 3 cut(s) 149, 671, 894
BsiSI CCGG 4 cut(s) 558, 1026, 1161, 1262
BslFI GGGAC 6 cut(s) 259, 502, 694, 1127, 1226, 1522
BslI CCNNNNNNNGG 5 cut(s) 299, 883, 1001, 1015, 1556
BsmAI GTCTC 3 cut(s) 164, 1023, 1277
BsmBI CGTCTC 1 cut(s) 1023
BsmFI GGGAC 6 cut(s) 259, 502, 694, 1127, 1226, 1522
BsnI GGCC 8 cut(s) 136, 419, 527, 533, 585, 846, 1197, 1470
Bsp1286I GDGCHC 5 cut(s) 149, 255, 671, 894, 1411
Bsp143I GATC 3 cut(s) 52, 448, 1187
BspACI CCGC 5 cut(s) 196, 278, 293, 461, 623
BspANI GGCC 8 cut(s) 136, 419, 527, 533, 585, 846, 1197, 1470
BspCNI CTCAG 2 cut(s) 913, 1285
BspHI TCATGA 1 cut(s) 1386
BspLI GGNNCC 3 cut(s) 181, 586, 1159
BspPI GGATC 2 cut(s) 47, 443
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 1157
BsrBI CCGCTC 3 cut(s) 280, 295, 623
BsrDI GCAATG 3 cut(s) 303, 348, 464
BsrFI RCCGGY 3 cut(s) 557, 1160, 1261
BsrI ACTGG 4 cut(s) 480, 740, 1115, 1471
BssAI RCCGGY 3 cut(s) 557, 1160, 1261
BssECI CCNNGG 3 cut(s) 432, 528, 1133
BssMI GATC 3 cut(s) 52, 448, 1187
Bst2UI CCWGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
Bst4CI ACNGT 3 cut(s) 816, 1039, 1453
Bst6I CTCTTC 3 cut(s) 287, 293, 1016
BstAPI GCANNNNNTGC 2 cut(s) 215, 615
BstC8I GCNNGC 3 cut(s) 216, 1023, 1505
BstDEI CTNAG 3 cut(s) 921, 1222, 1293
BstDSI CCRYGG 1 cut(s) 528
BstENI CCTNNNNNAGG 1 cut(s) 1013
BstF5I GGATG 7 cut(s) 107, 123, 519, 561, 714, 972, 1372
BstKTI GATC 3 cut(s) 55, 451, 1190
BstMAI GTCTC 3 cut(s) 164, 1023, 1277
BstMBI GATC 3 cut(s) 52, 448, 1187
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 8 cut(s) 215, 469, 615, 806, 828, 1166, 1415, 1526
BstNI CCWGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
BstNSI RCATGY 3 cut(s) 205, 511, 1370
BstPAI GACNNNNGTC 1 cut(s) 686
BstSCI CCNGG 7 cut(s) 432, 755, 833, 846, 994, 1133, 1393
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 4 cut(s) 456, 506, 746, 806
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZI CGGCCG 1 cut(s) 531
BsuRI GGCC 8 cut(s) 136, 419, 527, 533, 585, 846, 1197, 1470
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 1156
BtsCI GGATG 7 cut(s) 107, 123, 519, 561, 714, 972, 1372
BtsI GCAGTG 3 cut(s) 216, 255, 1317
BtsIMutI CAGTG 5 cut(s) 216, 255, 1048, 1290, 1317
Cac8I GCNNGC 3 cut(s) 216, 1023, 1505
CaiI CAGNNNCTG 1 cut(s) 756
CciI TCATGA 1 cut(s) 1386
Cfr10I RCCGGY 3 cut(s) 557, 1160, 1261
Cfr13I GGNCC 3 cut(s) 134, 584, 905
CseI GACGC 2 cut(s) 579, 1333
CsiI ACCWGGT 1 cut(s) 755
Csp6I GTAC 1 cut(s) 1284
CviQI GTAC 1 cut(s) 1284
DdeI CTNAG 3 cut(s) 921, 1222, 1293
DpnI GATC 3 cut(s) 54, 450, 1189
DpnII GATC 3 cut(s) 52, 448, 1187
DraIII CACNNNGTG 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 1037
DseDI GACNNNNNNGTC 1 cut(s) 1037
EaeI YGGCCR 3 cut(s) 525, 531, 1468
EagI CGGCCG 1 cut(s) 531
Eam1104I CTCTTC 3 cut(s) 287, 293, 1016
EarI CTCTTC 3 cut(s) 287, 293, 1016
EciI GGCGGA 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 892
EclXI CGGCCG 1 cut(s) 531
Eco24I GRGCYC 2 cut(s) 894, 1411
Eco47I GGWCC 1 cut(s) 905
Eco52I CGGCCG 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 733
EcoICRI GAGCTC 1 cut(s) 892
EcoNI CCTNNNNNAGG 1 cut(s) 1013
EcoO109I RGGNCCY 2 cut(s) 134, 584
EcoRII CCWGG 7 cut(s) 432, 755, 833, 846, 994, 1133, 1393
EcoT22I ATGCAT 1 cut(s) 1368
EcoT38I GRGCYC 2 cut(s) 894, 1411
Esp3I CGTCTC 1 cut(s) 1023
FalI AAGNNNNNCTT 2 cut(s) 1487, 1519
FaqI GGGAC 6 cut(s) 259, 502, 694, 1127, 1226, 1522
FauI CCCGC 2 cut(s) 285, 300
Fnu4HI GCNGC 5 cut(s) 196, 470, 495, 735, 820
FokI GGATG 7 cut(s) 94, 110, 526, 548, 721, 979, 1359
FriOI GRGCYC 2 cut(s) 894, 1411
Fsp4HI GCNGC 5 cut(s) 196, 470, 495, 735, 820
FspBI CTAG 4 cut(s) 131, 173, 1154, 1191
GluI GCNGC 5 cut(s) 196, 470, 495, 735, 820
GsaI CCCAGC 1 cut(s) 1003
GsuI CTGGAG 2 cut(s) 723, 817
HaeIII GGCC 8 cut(s) 136, 419, 527, 533, 585, 846, 1197, 1470
HapII CCGG 4 cut(s) 558, 1026, 1161, 1262
HgaI GACGC 2 cut(s) 579, 1333
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 2 cut(s) 367, 1219
HinfI GANTC 4 cut(s) 457, 1005, 1345, 1390
HpaII CCGG 4 cut(s) 558, 1026, 1161, 1262
HphI GGTGA 3 cut(s) 178, 736, 1106
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 19, 579, 1216
Hpy188III TCNNGA 3 cut(s) 502, 1342, 1387
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 5 cut(s) 392, 554, 573, 602, 1327
HpyAV CCTTC 8 cut(s) 93, 508, 575, 757, 786, 877, 1391, 1452
HpyCH4III ACNGT 3 cut(s) 816, 1039, 1453
HpyCH4IV ACGT 2 cut(s) 522, 1568
HpyCH4V TGCA 9 cut(s) 218, 517, 618, 1055, 1122, 1202, 1366, 1372, 1463
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 469, 615, 806, 828, 1166, 1415, 1526
HpyF3I CTNAG 3 cut(s) 921, 1222, 1293
HpySE526I ACGT 2 cut(s) 522, 1568
Kzo9I GATC 3 cut(s) 52, 448, 1187
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 4 cut(s) 185, 742, 836, 889
Lsp1109I GCAGC 4 cut(s) 456, 506, 746, 806
LweI GCATC 6 cut(s) 504, 534, 570, 939, 1381, 1536
MabI ACCWGGT 1 cut(s) 755
MaeI CTAG 4 cut(s) 131, 173, 1154, 1191
MaeII ACGT 2 cut(s) 522, 1568
MaeIII GTNAC 4 cut(s) 66, 742, 1149, 1559
MalI GATC 3 cut(s) 54, 450, 1189
MbiI CCGCTC 3 cut(s) 280, 295, 623
MboI GATC 3 cut(s) 52, 448, 1187
MboII GAAGA 4 cut(s) 274, 280, 937, 1003
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 5 cut(s) 149, 255, 671, 894, 1411
MlsI TGGCCA 2 cut(s) 527, 1470
MluCI AATT 5 cut(s) 77, 261, 1412, 1524, 1600
MluNI TGGCCA 2 cut(s) 527, 1470
MlyI GAGTC 1 cut(s) 1014
MmeI TCCRAC 3 cut(s) 135, 602, 1454
Mox20I TGGCCA 2 cut(s) 527, 1470
Mph1103I ATGCAT 1 cut(s) 1368
MscI TGGCCA 2 cut(s) 527, 1470
MseI TTAA 3 cut(s) 1298, 1494, 1511
MslI CAYNNNNRTG 2 cut(s) 512, 533
Msp20I TGGCCA 2 cut(s) 527, 1470
MspI CCGG 4 cut(s) 558, 1026, 1161, 1262
MspR9I CCNGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
MvaI CCWGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
MwoI GCNNNNNNNGC 8 cut(s) 215, 469, 615, 806, 828, 1166, 1415, 1526
NdeII GATC 3 cut(s) 52, 448, 1187
NlaIV GGNNCC 3 cut(s) 181, 586, 1159
NmuCI GTSAC 2 cut(s) 66, 742
NsiI ATGCAT 1 cut(s) 1368
NspI RCATGY 3 cut(s) 205, 511, 1370
OliI CACNNNNGTG 1 cut(s) 533
PagI TCATGA 1 cut(s) 1386
PciI ACATGT 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 287
PfeI GAWTC 3 cut(s) 457, 1345, 1390
PfoI TCCNGGA 2 cut(s) 833, 1393
PkrI GCNGC 5 cut(s) 197, 471, 496, 736, 821
PleI GAGTC 1 cut(s) 1013
PpsI GAGTC 1 cut(s) 1013
PscI ACATGT 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 686
PsiI TTATAA 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 894
Psp6I CCWGG 7 cut(s) 432, 755, 833, 846, 994, 1133, 1393
PspFI CCCAGC 1 cut(s) 999
PspGI CCWGG 7 cut(s) 432, 755, 833, 846, 994, 1133, 1393
PspN4I GGNNCC 3 cut(s) 181, 586, 1159
PspPI GGNCC 3 cut(s) 134, 584, 905
PstNI CAGNNNCTG 1 cut(s) 756
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 1285
RsaNI GTAC 1 cut(s) 1284
RseI CAYNNNNRTG 2 cut(s) 512, 533
SacI GAGCTC 1 cut(s) 894
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 3 cut(s) 1298, 1494, 1511
SatI GCNGC 5 cut(s) 196, 470, 495, 735, 820
Sau3AI GATC 3 cut(s) 52, 448, 1187
Sau96I GGNCC 3 cut(s) 134, 584, 905
SchI GAGTC 1 cut(s) 1014
ScrFI CCNGG 7 cut(s) 434, 757, 835, 848, 996, 1135, 1395
SduI GDGCHC 5 cut(s) 149, 255, 671, 894, 1411
SexAI ACCWGGT 1 cut(s) 755
SfaNI GCATC 6 cut(s) 504, 534, 570, 939, 1381, 1536
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 2 cut(s) 512, 533
Sse9I AATT 5 cut(s) 77, 261, 1412, 1524, 1600
SsiI CCGC 5 cut(s) 196, 278, 293, 461, 623
SspMI CTAG 4 cut(s) 131, 173, 1154, 1191
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 7 cut(s) 432, 755, 833, 846, 994, 1133, 1393
TaaI ACNGT 3 cut(s) 816, 1039, 1453
TaiI ACGT 2 cut(s) 525, 1571
TaqI TCGA 6 cut(s) 390, 568, 867, 894, 947, 1186
TasI AATT 5 cut(s) 77, 261, 1412, 1524, 1600
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 3 cut(s) 457, 1345, 1390
Tru1I TTAA 3 cut(s) 1298, 1494, 1511
Tru9I TTAA 3 cut(s) 1298, 1494, 1511
TscAI CASTG 5 cut(s) 216, 255, 1048, 1297, 1324
TseFI GTSAC 2 cut(s) 66, 742
TseI GCWGC 4 cut(s) 469, 494, 734, 819
Tsp45I GTSAC 2 cut(s) 66, 742
TspDTI ATGAA 3 cut(s) 75, 353, 361
TspGWI ACGGA 3 cut(s) 85, 586, 1047
TspRI CASTG 5 cut(s) 216, 255, 1048, 1297, 1324
VpaK11BI GGWCC 1 cut(s) 905
XagI CCTNNNNNAGG 1 cut(s) 1013
XapI RAATTY 1 cut(s) 77
XceI RCATGY 3 cut(s) 205, 511, 1370
XspI CTAG 4 cut(s) 131, 173, 1154, 1191
Zsp2I ATGCAT 1 cut(s) 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.